FMNL1 (formin like 1)

2016-10-01   Matheus Rodrigues Lopes , Patricia Favaro 

Identity

HGNC
LOCATION
17q21.31
LOCUSID
ALIAS
C17orf1,C17orf1B,FHOD4,FMNL,KW-13

Abstract

Formin-like 1 (FMNL1) is a member of the Formin protein family, which are regulators of actin and microtubule cytoskeletal dynamics. FMNL1 belongs to the subfamily of formins knows as Diaphanous-related formins (DRF) and is involved in processes such as phagocytosis, cell adhesion, podosome dynamics, cell migration, cytokinesis, and polarity control. It has been suggested that spatial and temporal regulation of FMNL1 is controlled by small Rho GTPases. The present review contains data on FMNL1 DNA\/RNA, protein encoded and function.

DNA/RNA

Description

FMNL1 full-length cDNA (Favaro et al., 2003) was obtained from the EST IL5-MT0208-210201-356-f01 (GenBank Accession No. BI028593), generated from the Human Cancer Genome Project (Dias Neto et al., 2000). The entire FMNL1 gene is located in chromosome 17 (17q21) and has a size of approximately 25.8 Kb (start: 45221444 and end: 45247320 bp; orientation: Plus strand) and contains 17 exons. The FMNL1 cDNA contains 3973 bp and is located in chromosome 17 (17q21).

Proteins

Atlas Image
Figure 1. Domain structure of FMNL1. Amino acid positions are identified. GBD; GTPase binding domain, DID; Diaphanous inhibitory domain; DD; dimerization domain. FH1 and FH2; Formin homology 1 and 2 domain. DAD; Diaphanous autoregulatory domain.

Description

Formin proteins are characterized by a unique and highly conserved C-terminal formin homology (FH) 2 domain, responsible for its interaction with actin (Wallar and Alberts, 2003; Higgs, 2005). Diaphanous-related formins (DRF) are characterized by regulatory domains at the N-terminus, including the GTPase binding domain (GBD), Diaphanous inhibitory domain (DID), and dimerization domain (DD), and a single C-terminal Diaphanous autoregulatory domain (DAD) (Figure 1). DRFs are regulated by an autoinhibitory interaction of DAD with DID (Li and Higgs, 2003). This autoinhibition is relieved through binding of an activated RhoGTPase to the GBD, resulting in activation of formin to polymerize actin filaments (Kuhn and Geyer, 2014)(Figure 2).
Atlas Image
Figure 2. Schematic model of regulation of DRF by RhoGTPases. DRF are autoinhibited in an inactivated state by the interaction of DAD with DID. Upon the interaction of an activated Rho GTPase with the GBD, the C-terminal autoregulatory domain is displaced from its N-terminal recognition site, resulting in the activation of formin and consequently the polymerization of actin filaments. Adapted from (Alberts, 2002).

Expression

In normal tissues, FMNL1 expression is restricted to peripheral blood mononuclear and homing tissues such as thymus, spleen, lymph nodes and bone marrow (Favaro et al., 2003; Schuster et al., 2007). In bone marrow, FMNL1 expression was restricted to myeloid cells and in lymph nodes, mature lymphocytes stain strongly for FMNL1 (Gardberg et al., 2014).
FMNL1 is highly expressed in a variety of hematopoietic malignancies, including cells from patients with lymphoid and myeloid leukemias and non-Hodgkins lymphomas, as well as malignant lymphoid and myeloid cell lines and in renal carcinoma cell lines (Favaro et al., 2003; Favaro et al., 2006; Schuster et al., 2007). Recently, Gardberg et al reported that FMNL1 to be also expressed in smooth muscle cells and myoepithelial cells (Gardberg et al., 2014).

Localisation

Immunohistochemical analyses have shown that FMNL1 staining is cytoplasmatic (Gardberg et al., 2014).

Function

Many functions have been attributed to FMNL1, such as cell adhesion, cytokinesis, cell polarization and migration in mitosis (Yayoshi-Yamamoto et al., 2000; Seth et al., 2006; Esue et al., 2008; Mersich et al., 2010). The silencing of FMNL1 reduces cell proliferation as well as migration of human leukemia cells and tumor growth (Favaro et al., 2013). FMNL1 is needed for cytotoxicity, polarization and maintenance of the Golgi complex in T-cells (Gomez et al., 2007; Colon-Franco et al., 2011). FMNL1 is involved in podosome dynamics in macrophage cell lines (Mersich et al., 2010) and a new splice variant of FMNL1, FMNL1γ, has been reported to induce polarized membrane nonapoptotic blebbing (Han et al., 2009). During mouse oocyte meiotic maturation, FMNL1 has shown to affect both actin dynamics and spindle formation, through a RHOA -FMNL1- GOLGA2 (GM130) pathway, leading to oocyte polar body extrusion (Wang et al., 2015; Yin and Sun, 2015)

Homology

FMNL1 shares homology with that of the other members of the formin protein family. FMNL1 also has a high homology among different species (Table 1).

Table 1. Comparative identity of human FMNL1 with other species

% Identity for:Homo sapiens FMNL1Symbol

Protein

DNA

vs. P. troglodytesFMNL1

99.0

99.0

vs. M. mulattaFMNL1

98.0

96.0

vs. C. jacchusFMNL1

95.0

95.0

vs. N. galiliFmnl1

94.0

88.0

vs. B. taurusFMNL1

93.0

86.0

vs. M. musculusFmnl1

93.0

85.0

vs. M. putoriusFMNL1

91.0

88.0

vs. C. lupusFMNL1

91.0

87.0

vs. R. norvegicusFmnl1

89.0

84.0

vs. G. gallusFMNL1

72.0

86.0

vs. I. punctalusfmnl1

69.0

82.0


(Source: http://www.ncbi.nlm.nih.gov/homologene)

Mutations

Somatic

Recurrent mutations in the FMNL1 gene are rare, and 123 substitution missense, 4 substitution nonsense, 57 substitution synonymous, 5 insertion inframe, 1 insertion frameshift, 9 deletions inframe and 3 deletion frameshift mutations are reported in COSMIC (Catalogue of somatic mutations in cancer; http://cancer.sanger.ac.uk/cancergenome/projects/cosmic).

Implicated in

Entity name
T-cell non-Hodgkins lymphoma
Note
A study performed in 54 frozen biopsies of T non-Hodgkins lymphoma (NHL) patients and five reactive lymph nodes showed that FMNL1 protein expression was detected in all samples. However, FMNL1 expression was highest in the T-cell NHL, when compared with others NHL (follicular NHL and diffuse large B-cell NHL) and reactive lymph nodes (Favaro et al., 2006).
Entity name
Leukemia
Note
FMNL1 protein is overexpressed in malignant cells from patients with lymphoid and myeloid leukemias, including chronic lymphocytic leukemia (CLL), acute B- and T-lymphoblastic leukemia and acute myeloid leukemia (Krackhardt et al., 2002; Favaro et al., 2003; Schuster et al., 2007). These findings are consistent with FMNL1 expression in human leukemic cell lines and also with a large-scale meta-analysis of gene expression in humans (A-AFFY-33, array platform) (Lukk et al., 2010; Favaro et al., 2013).
Entity name
Breast cancer
Note
Eight basal type breast cancer samples were tested for FMNL1 expression. In three cases, FMNL1 expression was restricted to inflammatory cells and in five samples, FMNL1 staining was observed in a subset of the malignant epithelial cells (Gardberg et al., 2014).

Bibliography

Pubmed IDLast YearTitleAuthors
124774012002Diaphanous-related Formin homology proteins.Alberts AS et al
218683682011Dynamic remodeling of the actin cytoskeleton by FMNL1γ is required for structural maintenance of the Golgi complex.Colón-Franco JM et al
107378002000Shotgun sequencing of the human transcriptome with ORF expressed sequence tags.Dias Neto E et al
188355652008The filamentous actin cross-linking/bundling activity of mammalian formins.Esue O et al
238016532013FMNL1 promotes proliferation and migration of leukemia cells.Favaro P et al
164949442006High expression of FMNL1 protein in T non-Hodgkin's lymphomas.Favaro PM et al
145924232003Human leukocyte formin: a novel protein expressed in lymphoid malignancies and associated with Akt.Favaro PM et al
247007562014Characterization of Leukocyte Formin FMNL1 Expression in Human Tissues.Gardberg M et al
173065702007Formins regulate the actin-related protein 2/3 complex-independent polarization of the centrosome to the immunological synapse.Gomez TS et al
198155542009Formin-like 1 (FMNL1) is regulated by N-terminal myristoylation and induces polarized membrane blebbing.Han Y et al
159508792005Formin proteins: a domain-based approach.Higgs HN et al
249148012014Formins as effector proteins of Rho GTPases.Kühn S et al
122003762002Identification of tumor-associated antigens in chronic lymphocytic leukemia by SEREX.Krackhardt AM et al
129067952003The mouse Formin mDia1 is a potent actin nucleation factor regulated by autoinhibition.Li F et al
203791722010A global map of human gene expression.Lukk M et al
206175182010The formin FRL1 (FMNL1) is an essential component of macrophage podosomes.Mersich AT et al
176268422007Allorestricted T cells with specificity for the FMNL1-derived peptide PP2 have potent antitumor activity against hematologic and other malignancies.Schuster IG et al
169431832006Autoinhibition regulates cellular localization and actin assembly activity of the diaphanous-related formins FRLalpha and mDia1.Seth A et al
128882962003The formins: active scaffolds that remodel the cytoskeleton.Wallar BJ et al
260835842015RhoA-mediated FMNL1 regulates GM130 for actin assembly and phosphorylates MAPK for spindle formation in mouse oocyte meiosis.Wang F et al
230257552012Isolation of human MHC class II-restricted T cell receptors from the autologous T-cell repertoire with potent anti-leukaemic reactivity.Weigand LU et al
109586832000FRL, a novel formin-related protein, binds to Rac and regulates cell motility and survival of macrophages.Yayoshi-Yamamoto S et al
263015022015FMNL1, a key regulator for asymmetric cell division.Yin S et al

Other Information

Locus ID:

NCBI: 752
MIM: 604656
HGNC: 1212
Ensembl: ENSG00000184922

Variants:

dbSNP: 752
ClinVar: 752
TCGA: ENSG00000184922
COSMIC: FMNL1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000184922ENST00000328118A0A0A0MR62
ENSG00000184922ENST00000331495O95466
ENSG00000184922ENST00000586092K7ERL1
ENSG00000184922ENST00000586643K7EJE6
ENSG00000184922ENST00000587489K7EK60
ENSG00000184922ENST00000589911K7EMY8

Expression (GTEx)

0
50
100
150
200
250
300

Pathways

PathwaySourceExternal ID
Signal TransductionREACTOMER-HSA-162582
Signaling by Rho GTPasesREACTOMER-HSA-194315
RHO GTPase EffectorsREACTOMER-HSA-195258
RHO GTPases Activate ForminsREACTOMER-HSA-5663220

Protein levels (Protein atlas)

Not detected
Low
Medium
High

References

Pubmed IDYearTitleCitations
198155542009Formin-like 1 (FMNL1) is regulated by N-terminal myristoylation and induces polarized membrane blebbing.31
211484822011Bi-modal regulation of a formin by srGAP2.24
206175182010The formin FRL1 (FMNL1) is an essential component of macrophage podosomes.22
234605122013The formins FMNL1 and mDia1 regulate coiling phagocytosis of Borrelia burgdorferi by primary human macrophages.17
145924232003Human leukocyte formin: a novel protein expressed in lymphoid malignancies and associated with Akt.14
238016532013FMNL1 promotes proliferation and migration of leukemia cells.12
231827052013Proteomic investigation of the interactome of FMNL1 in hematopoietic cells unveils a role in calcium-dependent membrane plasticity.9
300131892018FMNL1 mediates nasopharyngeal carcinoma cell aggressiveness by epigenetically upregulating MTA1.4
313871652019FMNL1 down-regulation suppresses bone metastasis through reducing TGF-β1 expression in non-small cell lung cancer (NSCLC).2
292834612018A pathway-based association analysis identified FMNL1-MAP3K14 as susceptibility genes for leprosy.0

Citation

Matheus Rodrigues Lopes ; Patricia Favaro

FMNL1 (formin like 1)

Atlas Genet Cytogenet Oncol Haematol. 2016-10-01

Online version: http://atlasgeneticsoncology.org/gene/46313/fmnl1