NELFA (negative elongation factor complex member A)

2003-05-01 Affiliation

Identity

HGNC

NELFA

LOCATION

4p16.3

LOCUSID

7469

ALIAS

NELF-A,P/OKcl.15,WHSC2

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 7469
MIM: 606026
HGNC: 12768
Ensembl: ENSG00000185049

Variants:

dbSNP: 7469
ClinVar: 7469
TCGA: ENSG00000185049
COSMIC: NELFA

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000185049	ENST00000333877	F8W954
ENSG00000185049	ENST00000382882	Q9H3P2
ENSG00000185049	ENST00000382882	A0A0C4DFX9
ENSG00000185049	ENST00000411649	H7C0W2
ENSG00000185049	ENST00000416258	H0Y3X6
ENSG00000185049	ENST00000421397	H7C3C2
ENSG00000185049	ENST00000431323	C9JHL4
ENSG00000185049	ENST00000443203	F8WF98
ENSG00000185049	ENST00000453740	H7C2C7
ENSG00000185049	ENST00000455762	C9JEM7
ENSG00000185049	ENST00000458616	H7C2M8
ENSG00000185049	ENST00000542778	A0A0C4DFX9

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Pathways

Pathway	Source	External ID
Disease	REACTOME	R-HSA-1643685
Infectious disease	REACTOME	R-HSA-5663205
HIV Infection	REACTOME	R-HSA-162906
HIV Life Cycle	REACTOME	R-HSA-162587
Late Phase of HIV Life Cycle	REACTOME	R-HSA-162599
Transcription of the HIV genome	REACTOME	R-HSA-167172
HIV Transcription Elongation	REACTOME	R-HSA-167169
Formation of the HIV-1 Early Elongation Complex	REACTOME	R-HSA-167158
Tat-mediated elongation of the HIV-1 transcript	REACTOME	R-HSA-167246
Formation of HIV-1 elongation complex containing HIV-1 Tat	REACTOME	R-HSA-167200
Abortive elongation of HIV-1 transcript in the absence of Tat	REACTOME	R-HSA-167242
HIV elongation arrest and recovery	REACTOME	R-HSA-167287
Formation of HIV elongation complex in the absence of HIV Tat	REACTOME	R-HSA-167152
Pausing and recovery of HIV elongation	REACTOME	R-HSA-167290
Tat-mediated HIV elongation arrest and recovery	REACTOME	R-HSA-167243
Pausing and recovery of Tat-mediated HIV elongation	REACTOME	R-HSA-167238
Gene Expression	REACTOME	R-HSA-74160
Generic Transcription Pathway	REACTOME	R-HSA-212436
Transcriptional Regulation by TP53	REACTOME	R-HSA-3700989
RNA Polymerase II Transcription	REACTOME	R-HSA-73857
RNA Polymerase II Pre-transcription Events	REACTOME	R-HSA-674695
RNA Polymerase II Transcription Elongation	REACTOME	R-HSA-75955
Formation of the Early Elongation Complex	REACTOME	R-HSA-113418
Formation of RNA Pol II elongation complex	REACTOME	R-HSA-112382
TP53 Regulates Transcription of DNA Repair Genes	REACTOME	R-HSA-6796648

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
17499042	2007	NELF interacts with CBC and participates in 3' end processing of replication-dependent histone mRNAs.	100
12612062	2003	Human transcription elongation factor NELF: identification of novel subunits and reconstitution of the functionally active complex.	86
20379614	2010	Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.	62
22328085	2012	Characterizing the functional consequences of haploinsufficiency of NELF-A (WHSC2) and SLBP identifies novel cellular phenotypes in Wolf-Hirschhorn syndrome.	20
27282391	2016	Architecture and RNA binding of the human negative elongation factor.	15
24097989	2013	A conserved protein motif is required for full modulatory activity of negative elongation factor subunits NELF-A and NELF-B in modifying glucocorticoid receptor-regulated gene induction properties.	9
19245807	2009	Cellular dynamics of the negative transcription elongation factor NELF.	3
12715353	2002	[Genetic determination of Wolf-Hirschhorn syndrome ].	0

Citation

Dessen P

NELFA (negative elongation factor complex member A)

Atlas Genet Cytogenet Oncol Haematol. 2003-05-01

Online version: http://atlasgeneticsoncology.org/gene/42811/nelfa