PGBD1 (piggyBac transposable element derived 1)

2014-11-01  

Identity

HGNC
PGBD1
LOCATION
6p22.1
LOCUSID
84547
ALIAS
HUCEP-4,SCAND4,dJ874C20.4

Other Information

Locus ID:

NCBI: 84547
HGNC: 19398
Ensembl: ENSG00000137338

Variants:

dbSNP: 84547
ClinVar: 84547
TCGA: ENSG00000137338
COSMIC: PGBD1

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000137338ENST00000259883Q96JS3

Expression (GTEx)

0
5
10
15
20
Adipose - Subcutaneous
Adipose - Visceral
Adrenal Gland
Artery - Aorta
Artery - Tibial
Bladder
Brain - Amygdala
Brain - Anterior cingulate cortex
Brain - Caudate
Brain - Cerebellar Hemisphere
Brain - Cerebellum
Brain - Cortex
Brain - Frontal Cortex
Brain - Hippocampus
Brain - Hypothalamus
Brain - Nucleus accumbens
Brain - Putamen
Brain - Spinal cord
Brain - Substantia nigra
Breast - Mammary Tissue
Cells - Cultured fibroblasts
Cells - EBV - transformed lymphocytes
Cervix - Ectocervix
Cervix - Endocervix
Colon - Sigmoid
Colon - Transverse
Esophagus - Gastroesophageal Junction
Esophagus - Mucosa
Esophagus - Muscularis
Fallopian Tube
Heart - Atrial Appendage
Heart - Left Ventricle
Kidney - Cortex
Kidney - Medulla
Liver
Lung
Minor Salivary Gland
Muscle - Skeletal
Nerve - Tibial
Ovary
Pancreas
Pituitary
Prostate
Skin - Not Sun Exposed
Skin - Sun Exposed
Small Intestine - Terminal Ileum
Spleen
Stomach
Testis
Thyroid
Uterus
Vagina
Whole Blood

Protein levels (Protein atlas)

Not detected
Low
Medium
High
N/A

References

Pubmed IDYearTitleCitations
205347412010Association of CR1, CLU and PICALM with Alzheimer's disease in a cohort of clinically characterized and neuropathologically verified individuals.108
220375522011Genome-wide association study identifies a susceptibility locus for schizophrenia in Han Chinese at 11p11.2.95
206738772010Common variants in major histocompatibility complex region and TCF4 gene are significantly associated with schizophrenia in Han Chinese.25
188307242009Assessment of Alzheimer's disease case-control associations using family-based methods.21
262080392015PiggyBac transposon-mediated gene delivery efficiently generates stable transfectants derived from cultured primary human deciduous tooth dental pulp cells (HDDPCs) and HDDPC-derived iPS cells.6
224888952012No associations found between the genes situated at 6p22.1, HIST1H2BJ, PRSS16, and PGBD1 in Japanese patients diagnosed with schizophrenia.4
286620652017Monoclonal antibodies expression improvement in CHO cells by PiggyBac transposition regarding vectors ratios and design.2
208732192010[Polymorphic markers G(-455)A of gene FGB and C(-1654)T of gene PROC and genetic predisposition to unfavorable outcomes patients undergoing acute coronary syndrome].0

Citation

Dessen P

PGBD1 (piggyBac transposable element derived 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/71857/pgbd1