SHROOM1 (shroom family member 1)

2014-11-01 Affiliation

Identity

HGNC

SHROOM1

LOCATION

5q31.1

LOCUSID

134549

ALIAS

APXL2

Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, contribute in submission tool

Other Information

Locus ID:

NCBI: 134549
MIM: 611179
HGNC: 24084
Ensembl: ENSG00000164403

Variants:

dbSNP: 134549
ClinVar: 134549
TCGA: ENSG00000164403
COSMIC: SHROOM1

RNA/Proteins

Gene ID	Transcript ID	Uniprot
ENSG00000164403	ENST00000319854	Q2M3G4
ENSG00000164403	ENST00000378676	A6NN40
ENSG00000164403	ENST00000378679	Q2M3G4
ENSG00000164403	ENST00000440118	C9JXU1
ENSG00000164403	ENST00000617339	Q2M3G4

Expression (GTEx)

Adipose - Subcutaneous

Adipose - Visceral

Adrenal Gland

Artery - Aorta

Artery - Tibial

Bladder

Brain - Amygdala

Brain - Anterior cingulate cortex

Brain - Caudate

Brain - Cerebellar Hemisphere

Brain - Cerebellum

Brain - Cortex

Brain - Frontal Cortex

Brain - Hippocampus

Brain - Hypothalamus

Brain - Nucleus accumbens

Brain - Putamen

Brain - Spinal cord

Brain - Substantia nigra

Breast - Mammary Tissue

Cells - Cultured fibroblasts

Cells - EBV - transformed lymphocytes

Cervix - Ectocervix

Cervix - Endocervix

Colon - Sigmoid

Colon - Transverse

Esophagus - Gastroesophageal Junction

Esophagus - Mucosa

Esophagus - Muscularis

Fallopian Tube

Heart - Atrial Appendage

Heart - Left Ventricle

Kidney - Cortex

Kidney - Medulla

Liver

Lung

Minor Salivary Gland

Muscle - Skeletal

Nerve - Tibial

Ovary

Pancreas

Pituitary

Prostate

Skin - Not Sun Exposed

Skin - Sun Exposed

Small Intestine - Terminal Ileum

Spleen

Stomach

Testis

Thyroid

Uterus

Vagina

Whole Blood

Protein levels (Protein atlas)

Not detected

Low

Medium

High

References

Pubmed ID	Year	Title	Citations
26484395	2016	Identification of differentially methylated regions in new genes associated with knee osteoarthritis.	12
27758857	2016	Structure of the Shroom-Rho Kinase Complex Reveals a Binding Interface with Monomeric Shroom That Regulates Cell Morphology and Stimulates Kinase Activity.	7

Citation

Dessen P

SHROOM1 (shroom family member 1)

Atlas Genet Cytogenet Oncol Haematol. 2014-11-01

Online version: http://atlasgeneticsoncology.org/gene/73234/shroom1