SHC4 (SHC (Src homology 2 domain containing) family, member 4)

2009-09-01   Luigi Pasini , Luisa Lanfrancone 

IEO, European Institute of Oncology, Department of Experimental Oncology, IFOM-IEO Campus, Via Adamello 16, 20139 Milano, Italy

Identity

HGNC
LOCATION
15q21.1
LOCUSID
ALIAS
RaLP,SHCD
FUSION GENES

DNA/RNA

Atlas Image
Genomic position of the human SHC4 locus, situated on the long arm (q21.1-q21.2) of chromosome 15. The DNA sequence containing the SHC4 gene also codifies for the short unrelated transcript EID1.

Description

Human SHC4 locus spans 139,707 bases on chromosome 15, starting at position 46,903,227 bp and ending at position 47,042,933 from pter (according to hg18-Mar-2006). The same locus that codifies for SHC4 transcript also produces the small and unrelated protein EP300 interacting inhibitor of differentiation 1 (EID1) that has been found only in the mammalian genome. Orthologs of SHC4 are present in other metazoan. The corresponding mouse gene is located on chromosome 2F1.

Transcription

Both human and mouse SHC4 open reading frame consist of twelve exons, producing nucleotide sequences of 1893 nt and 1881 nt respectively that encode for putative polypeptides of 630 amino acids in human and 626 amino acids in mouse. No clear evidence of alternative splicing isoforms of the main mRNA transcript has been found so far.

Pseudogene

None identified.

Proteins

Atlas Image
SHC4 shares the same genomic architecture and protein organization typical of the SHC family. Evolutionarily conserved phosphotyrosine sites in the collagen homology 1 (CH1) region are marked in blue. Green boxes identify exons; bent arrow highlights the first ATG codon.

Description

The amino-terminal positioning of the phosphotyrosine-binding (PTB) domain and the carbossi-terminal positioning of the Src homology 2 (SH2) domain is a hallmark of the SHC family. These two domains are divided by the CH1 region, which contains three highly conserved tyrosine residues. A second collagen homology (CH2) region is present in the longest isoforms of the Shc family members and in SHC4. The human SHC4 protein consists of 630 amino acids with a total estimated molecular weight of 69 KDa. Although no splicing isoform are known, it is postulated that two other polypeptides may be produced by the usage of alternate initiator codons, corresponding to predicted products of 59 KDa and 49 KDa.

Expression

Human SHC4 shows a specific expression in advanced-stage melanomas and in no other human normal and tumoral adult tissues. SHC4 protein product is detected in primary cultures and cell lines of metastatic melanoma, while its expression decreases in non-invasive melanoma cell lines and in primary melanocytes. In adult mouse tissues SHC4 is primarily detected in brain and skeletal muscle.

Localisation

In humans, SHC4 protein is mostly localized in the cytosol of melanocytes and melanoma cells and partly to cell membranes. The murine SHC4 protein was demonstrated to co-localize with muscle-specific kinase (MuSK) at the postsynaptic neuromuscular junction (NMJ).

Function

SHC4 is a substrate of several receptor tyrosine kinases (RTK) and G protein-coupled receptors (GPCR). When ectopically expressed in non-metastatic melanoma cell lines SHC4 becomes phosphorylated upon growth factor stimulation and associates with the growth factor receptor-bound protein 2 (Grb2). Tyrosine-phosphorylated SHC4 induces Ras GTPase and mitogen activated protein kinase (MAPK) activation, resulting in enhanced cell migration. Conversely, silencing of SHC4 expression in metastatic melanoma cells reduces migration without affecting MAPK pathway, suggesting that SHC4 may participate in both Ras - dependent and - independent pathways in human melanoma. SHC4 appears to be important for the regulation of postsynaptic signals of motoneurons through association with MuSK and activation of acetylcholine receptors (AChR), as indicated by biochemical studies of the mouse protein.

Homology

Among all the human paralogous genes, SHC4 shares an overall identity at protein level of 45%, 37% and 41% with SHC1, SHC2, and SHC3 respectively. The highest conservation is detected in the PTB and SH2 regions. Human and murine SHC4 display 75% sequence identity in both the PTB and SH2 domains.
Atlas Image
Phylogenetic relationship of SHC proteins based on the comparison of their aminoacidic sequences. SHC4 is most likely derived by gene duplication of the SHC1 locus.

Implicated in

Entity name
Melanoma
Disease
Melanoma is an extremely aggressive cancer of the skin and of the internal mucosa that is capable of metastasizing in almost every site of the body. Patients with an advanced-stage melanoma are at greater risk of dying of their melanoma.
Prognosis
The more reliable prognostic parameters in melanoma are the Breslow measurement and the Clark level. The Breslow index measures the thickness of the melanoma: the thinner the melanoma, the better the prognosis. In general, melanomas less than 1 millimeter (mm) in depth have a very small chance of spreading and then invading. The Clark level describes how far a melanoma has penetrated into the skin, using a scale of I to V (with higher numbers indicating a deeper melanoma). According to Clarks model, cutaneous melanoma initially develops from an in situ growth to a radial growth phase (RGP) and evolves into the vertical growth phase (VGP), which is associated to an increased risk of metastatization.
Oncogenesis
The RGP melanoma expands radially into the epidermis and proceeds to the VGP phase invading the dermis, before becoming metastatic. Analysis of a cohort of human melanoma lesions at various stages of the disease revealed that SHC4 expression is found in around 50% of the VGP and metastatic melanomas and not in nevi and RGP melanomas, thus suggesting a putative role for SHC4 as a prognostic marker. When SHC4 is ectopically overexpressed in RGP melanoma cells it can stimulate migration in vitro, without perturbing proliferation. Conversely, SHC4 silencing in metastatic melanoma cell lines inhibits migration and delays tumor formation in vivo, suggesting that SHC4 is important for the invasive potential of melanoma cells.

Bibliography

Pubmed IDLast YearTitleAuthors
174094132007RaLP, a new member of the Src homology and collagen family, regulates cell migration and tumor growth of metastatic melanomas.Fagiani E et al
174524442007Analysis of a Shc family adaptor protein, ShcD/Shc4, that associates with muscle-specific kinase.Jones N et al
190637092009Melanoma: targeting signaling pathways and RaLP.Pasini L et al

Other Information

Locus ID:

NCBI: 399694
MIM: 617372
HGNC: 16743
Ensembl: ENSG00000185634

Variants:

dbSNP: 399694
ClinVar: 399694
TCGA: ENSG00000185634
COSMIC: SHC4

RNA/Proteins

Gene IDTranscript IDUniprot
ENSG00000185634ENST00000332408Q6S5L8
ENSG00000185634ENST00000396535Q6S5L8
ENSG00000185634ENST00000537958F5H5M1
ENSG00000185634ENST00000557797H0YLU6
ENSG00000185634ENST00000558220H0YLZ2

Expression (GTEx)

0
5
10
15
20
25
30
35
40
45

Pathways

PathwaySourceExternal ID
ErbB signaling pathwayKEGGko04012
Focal adhesionKEGGko04510
Natural killer cell mediated cytotoxicityKEGGko04650
Insulin signaling pathwayKEGGko04910
GliomaKEGGko05214
Chronic myeloid leukemiaKEGGko05220
ErbB signaling pathwayKEGGhsa04012
Focal adhesionKEGGhsa04510
Natural killer cell mediated cytotoxicityKEGGhsa04650
Insulin signaling pathwayKEGGhsa04910
GliomaKEGGhsa05214
Chronic myeloid leukemiaKEGGhsa05220
Chemokine signaling pathwayKEGGko04062
Chemokine signaling pathwayKEGGhsa04062
Neurotrophin signaling pathwayKEGGko04722
Neurotrophin signaling pathwayKEGGhsa04722
Bacterial invasion of epithelial cellsKEGGko05100
Bacterial invasion of epithelial cellsKEGGhsa05100
AlcoholismKEGGhsa05034
AlcoholismKEGGko05034
Estrogen signaling pathwayKEGGhsa04915
Estrogen signaling pathwayKEGGko04915
Prolactin signaling pathwayKEGGhsa04917
Prolactin signaling pathwayKEGGko04917
MicroRNAs in cancerKEGGhsa05206
MicroRNAs in cancerKEGGko05206
Ras signaling pathwayKEGGhsa04014
Phospholipase D signaling pathwayKEGGko04072
Phospholipase D signaling pathwayKEGGhsa04072
EGFR tyrosine kinase inhibitor resistanceKEGGko01521
Endocrine resistanceKEGGko01522
EGFR tyrosine kinase inhibitor resistanceKEGGhsa01521
Endocrine resistanceKEGGhsa01522
Breast cancerKEGGko05224
Breast cancerKEGGhsa05224

References

Pubmed IDYearTitleCitations
203796142010Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score.62
244308692014The ShcD signaling adaptor facilitates ligand-independent phosphorylation of the EGF receptor.6
287247582017The ShcD phosphotyrosine adaptor subverts canonical EGF receptor trafficking.4
282135212017Signaling adaptor ShcD suppresses extracellular signal-regulated kinase (Erk) phosphorylation distal to the Ret and Trk neurotrophic receptors.2
174524442007Analysis of a Shc family adaptor protein, ShcD/Shc4, that associates with muscle-specific kinase.0
200789412009[ShcD interacts with TrkC through its PTB and SH2 domains].0
206634102010ShcD interacts with TrkB via its PTB and SH2 domains and regulates BDNF-induced MAPK activation.0
240362172014A nuclear export signal and oxidative stress regulate ShcD subcellular localisation: a potential role for ShcD in the nucleus.0

Citation

Luigi Pasini ; Luisa Lanfrancone

SHC4 (SHC (Src homology 2 domain containing) family, member 4)

Atlas Genet Cytogenet Oncol Haematol. 2009-09-01

Online version: http://atlasgeneticsoncology.org/gene/44503/shc4