Atlas of Genetics and Cytogenetics in Oncology and Haematology

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Chromosome 1

Chromosome 1 : G-banding, diagram and R-banding - Claude Léonard, Jean-Loup Huret

Leukaemia     

1q rearrangements in multiple myeloma
1p32 rearrangements
t(1;1)(p36;q21) in Non Hodgkin Lymphoma
t(1;2)(q25;p23)
t(1;2)(q12;q37)
t(1;3)(p36;q21)
t(1;3)(p36;p21)
t(1;3)(p32;p21)
t(1;5)(p32;q31)
t(1;5)(q21;q33) (MPD; TPM3/PDGFRB; rare)
t(1;5)(q22;q33)
t(1;6)(p35;p25)
t(1;7)(q10;p10)
t(1;7)(p36;q34)
t(1;7)(p34;q34)
t(1;7)(q21;q22)
t(1;7)(p32;q34)
t(1;8)(p22-p32;q22-q23)
t(1;9)(q24;q34)
t(1;11)(p32;q23) (AML, ALL; AF1P and MLL; not rare)
t(1;11)(q23;p15)
t(1;11)(q21;q23)
t(1;12)(q25;p13)
t(1;12)(p36;p13)
t(1;12)(q21;p13) (AML, ALL; ARNT and ETV6; rare)
t(1;13)(q32;q14)
t(1;14)(p32;q11)
t(1;14)(q21;q32) BCL9/IGH
t(1;14)(q21;q32) FCGR2B/IGH
t(1;14)(q21;q32) IRTA1/IGH
t(1;14)(q21;q32) MUC1/IGH
t(1;14)(q23;q32) (ALL, NHL, CLD; ---; rare)
t(1;14)(q25;q32)
t(1;14)(p22;q32) in non Hodgkin's lymphoma (NHL)
dic(1;15)(p11;p11)
t(1;16)(q11;q11)
t(1;16)(q12;q24)
t(1;18)(q25;q23)
t(1;18)(q10;q10)
t(1;19)(q23;p13)
t(1;19)(p13;p13.1)
t(1;21)(p36;q22)
t(1;21)(p32;q22)
t(1;21)(p35;q22)
t(1;21)(q21;q22)
t(1;22)(q21;q11)
t(1;22)(p13;q13)
t(Y;1)(q12;q12)

Solid Tumors     

inv(1)(q22;q25)
t(1;2)(q25;p23)
t(1;2)(q25;p23)
t(1;2)(q25;p23)
t(1;3)(q22;q12)
t(1;3)(p36;q25)
t(1;13)(p36;q14)
t(1;13)(p36;q14)
t(1;17)(p34;p13)
t(X;1)(p11;q21)

Cancer prone diseases     

Autoimmune Lymphoproliferative Syndrome
Glomuvenous malformation (GVM)
Hereditary Paraganglioma (PGL)
Hereditary prostate cancer
Hyperparathyroidism-Jaw Tumor syndrome (HPT-JT)
MAP (MUTYH-Associated Polyposis )
MUTYH associated polyposis

All Genes by Location (Kb)
Chromosome 1 by location

Losses / Amplicons     

BONE/SOFT TISSUE

External links     

  • Chromosome 1 - HUGO Chromosomes
  • Chromosome 1 - GoldenPath - Santa Cruz
  • Chromosome 1 - Ensembl Project
  • Chromosome 1 - Map View - NCBI
  • Chromosome 1 - GDB (Genome Data Base)
  • Chromosome 1 - OMIM Gene map
  • Chromosome 1 - Genomic Variants
  • Chromosome 1 - HAPMAP Project
  • Chromosome 1 - Genome Channel - ORNL
  • Chromosome 1 - LaunchPad HGMIS
  • Chromosome 1 - Human Protein Atlas
  • Chromosome 1 - SpliceNest
  • Human BAC Resource (NCBI)
  • FISH-mapped BACs (CCAP)
  • Genetic Maps (CHLC)
  • YACs mapped by FISH (Bari)
  • PCP (Partial Chromosome Paints) (Bari)
  • Positional Cloning Project (Berlin Dahlem)
  • Mouse homology - OMIM - NCBI
  • Cancer GeneWeb
  • GeneCards (Weizmann)
  • Human Proteomics Initiative (Expasy)

    • Genes

    Annotated genes
    Ordered by Name Ordered by Location
     Kb pter-qter
    ABL2 177335.085 1q25.2
    AKT3 241733.107 1q44
    ARHGEF2 154183.269 1q21-q22
    ARNT 149048.810 1q21
    BCL9 145479.806 1q21
    CASP9 15691.382 1p36.21
    CD53 111217.245 1p13
    CDC20 43597.213 1p34.1
    CDC73 191357.784 1q25
    CENPF 212843.155 1q32-q41
    EGLN1 229568.054 1q42.1
    ENAH 223741.157 1q32.2
    EPS15 51592.523 1p32
    ERRFI1 7994.381 1p36.23
    FCGR2B 159899.564 1q23
    FH 239727.527 1q42.1
    FRAP1 11089.179 1p36
    GLMN 92484.543 1p22.1
    GPA33 165288.706 1q24.1
    JUN 59019.051 1p32-p31
    KCNH1 208918.280 1q32.2
    KIF14 198787.930 1q32.1
    LCK 32512.299 1p34.3
    LPHN2 82038.670 1p31.1
    MDS2 23826.410 1p36
    MIB2 1540.747 1p36.33
    MLLT11 149298.775 1q21
    MTHFR 11768.374 1p36.3
    MUTYH 45567.501 1p34.1
    NOTCH2 120255.699 1p13-p11
    NRAS 115048.601 1p13.2
    PBX1 162795.561 1q23.3
    PDE4DIP 143663.118 1q21.1
    PRCC 155003.898 1q21.1
    PRDM16 2975.604 1p36.23-p33
    PRDM2 13948.463 1p36
    PRDX1 45749.294 1p34.1
    PTCH2 45060.674 1p34.1
    PTGS2 184907.592 1q25.2-q25.3
    PVRL4 159308.120 1q22-q23.2
    RAP1A 111963.928 1p13.3
    RBM15 110683.468 1p13
    REG4 120138.231 1p13.1-p12
    RHOC 113045.272 1p13.1
    RPS6KA1 26744.930 1p
    RSPO1 37849.538 1p34.2
    S100A13 151857.900 1q21
    SDHB 17217.812 1p36.1-p35
    SDHC 159550.790 1q21
    SELE 167958.405 1q22-q25
    SFPQ 35421.788 1p34.3
    STIL 47488.398 1p32
    TAL1 47454.551 1p32
    TGFBR3 91920.575 1p33-p32
    TNN 173303.617 1q23-q24
    TPM3 152394.404 1q21.2
    TPR 184547.409 1q25
    TSPAN1 46418.799 1p33
    VTCN1 117487.732 1p12
    WDR77 111784.035 1p13.2
    Other genes
    possibly implicated
    in cancer
    Ordered by Name Ordered by Location
     Kb pter-qter
    ACBD3 224399.003 1q41
    ACOT7 6246.919 1p36
    ACTA1 227633.616 1q42.13
    ADAM15 153290.386 1q21.3
    ADAM30 120237.679 1p13-p11
    ADAMTS4 159426.162 1q31-q32
    ADC 33319.301 1p35.1
    ADIPOR1 201176.584 1q32.1
    ADORA3 111843.574 1p21-p13
    ADSS 242638.419 1q44
    AGMAT 15771.739 1p36.21
    AGRN 945.366 1p36.33
    AGT 228904.892 1q41-qter
    AIM1L 26520.937 1p35
    AIM2 157298.899 1q22
    AJAP1 4614.965 1p36.32
    AK2 33251.170 1p35.1
    AK5 77520.875 1p31
    AKR1A1 45789.085 1p33-p32
    AKR7A2 19503.049 1p36.13
    AKR7A3 19481.644 1p36.13
    ALDH4A1 19070.513 1p36
    ALDH9A1 163898.073 1q22-q23
    ALPL 21708.445 1p36.12
    AMPD1 115017.245 1p13
    AMPD2 109964.799 1p13.3
    ANGPTL1 177085.293 1p36.13-q31.3
    ANGPTL3 62835.775 1p31.1-p22.3
    AOF2 23218.533 1p36.12
    APITD1 10412.746 1p36.22
    ARF1 226336.984 1q42.13
    ARHGAP29 94407.051 1p22.1
    ARHGEF10L 17779.635 1p36.13
    ARHGEF11 155171.256 1q21
    ARHGEF16 3361.007 1p36.3
    ARHGEF19 16397.186 1p36.13
    ARID1A 26895.109 1p36.1-p35
    ARID4B 233396.833 1q42.1-q43
    ASAP3 23627.643 1p36.13
    ASH1L 153571.676 1q22
    ASPM 195319.880 1q31
    ATF3 210805.320 1q32.3
    ATF6 160002.708 1q22-q23
    ATG4C 63022.391 1p31.3
    ATP1B1 167342.571 1q22-q25
    ATP6V0B 44213.189 1p32.3
    AURKAIP1 1298.973 1p36.33
    B4GALT2 44218.770 1p34-p33
    BAI2 31965.305 1p35
    BAT2D1 169721.290 1q24.3
    BCAR3 93799.937 1p22.1
    BCAS2 114911.704 1p13.2
    BCL10 85504.048 1p22
    BCL2L15 114220.959 1p13.2
    BGLAP 154478.575 1q25-q31
    BLZF1 167603.818 1q24
    BMP8B 39996.490 1p35-p32
    BNIPL 149275.658 1q21.2
    BRDT 92190.297 1p22.1
    BTG2 201541.287 1q32
    C1QA 22835.705 1p36.3-p34.1
    C1orf102 36656.094 1p34.3
    C1orf124 229540.305 1q42.12-q43
    C1orf128 23977.475 1p36.11
    C1orf149 37730.763 1p35.3-p33
    C1orf159 1007.061 1p36.33
    C1orf38 28071.642 1p35.2
    C4BPA 205344.230 1q32
    CA6 8928.509 1p36.2
    CABC1 225194.561 1q42.11
    CACNA1E 179719.339 1q25-q31
    CACYBP 173235.194 1q24-q25
    CAMK1G 207823.668 1q32-q41
    CAMK2N1 20681.471 1p36.12
    CAMTA1 6767.971 1p36.31-p36.23
    CAPN2 221966.742 1q41-q42
    CAPN9 228949.753 1q42.11-q42.3
    CAPZB 19537.860 1p36.1
    CASZ1 10619.253 1p36.22
    CCDC18 93418.508 1p22.1
    CCT3 154545.376 1q23
    CD160 144407.155 1q21.2
    CD1A 156490.551 1q22-q23
    CD1C 156526.187 1q22-q23
    CD1D 156416.361 1q22-q23
    CD2 117098.609 1p13
    CD244 159066.574 1q23.1
    CD247 165666.501 1q22-q25
    CD34 206126.506 1q32
    CD46 205992.025 1q32
    CD48 158915.160 1q21.3-q22
    CD52 26516.998 1p36
    CD55 205561.440 1q32
    CD58 116858.680 1p13
    CDA 20788.031 1p36.2-p35
    CDC14A 100590.611 1p21
    CDC2L1 1560.963 1p36
    CDC2L2 1624.030 1p36.3
    CDC42 22251.707 1p36.1
    CDC42BPA 225244.189 1q42.11
    CDC7 91739.032 1p22
    CDCA8 37930.746 1p34.3
    CDKN2C 51206.955 1p32.3
    CEP350 178190.531 1q25.2
    CFH 194887.631 1q32
    CHD1L 145180.915 1q21.1
    CHD5 6084.439 1p36.31
    CHI3L1 201414.682 1q32.1
    CHIT1 201451.830 1q31-q32
    CITED4 41099.315 1p34.1
    CKS1B 153213.838 1q21.2
    CLCA1 86707.114 1p22.3
    CLCA2 86662.357 1p22.3
    CLCN6 11788.794 1p36
    CLCNKA 16221.073 1p36
    CLIC4 24944.435 1p
    CLK2 153499.283 1q21
    CLSPN 35974.405 1p34.3
    CNKSR1 26376.568 1p35.3
    CNR2 24073.047 1p36.11
    CNTN2 203278.963 1q32.1
    COL9A2 40538.750 1p33-p32
    COPA 158525.001 1q23-q25
    CPSF3L 1236.828 1p36.33
    CPT2 53434.689 1p32
    CR1 205736.096 1q32
    CRABP2 154936.030 1q21.3
    CREB3L4 152207.021 1q21.2
    CREG1 165776.875 1q24
    CRNN 150648.343 1q21
    CRP 157948.703 1q21-q23
    CSF1 110254.756 1p21-p13
    CSF3R 36704.231 1p35-p34.3
    CSRP1 199719.283 1q32
    CTNNBIP1 9830.921 1pter-p36.31
    CTPS 41217.594 1p34.1
    CTRC 15637.525 1p36.21
    CTSE 204484.082 1q32.1
    CTSK 149035.311 1q21
    CYP2J2 60131.568 1p31.3-p31.2
    CYP4A11 47167.433 1p33
    CYP4B1 47037.257 1p34-p12
    CYP4Z1 47305.747 1p33
    CYR61 85819.048 1p22.3
    DAB1 57236.167 1p31-p32
    DAP3 153925.498 1q22
    DARC 157441.825 1q21-q22
    DCLRE1B 114249.561 1p11.1
    DDEFL1 23627.643 1p36.13
    DDOST 20850.847 1p36.1
    DDR2 160868.852 1q12-q23
    DDX20 112099.777 1p21.1-p13.2
    DENND2D 111531.324 1p13.3
    DFFA 10443.190 1p36.3-p36.2
    DFFB 3763.705 1p36.3
    DHCR24 55087.888 1p32.3
    DHRS3 12550.526 1p36.1
    DHX9 181075.074 1q25
    DIO1 54132.449 1p33-p32
    DIRAS3 68284.233 1p31
    DISC1 229829.184 1q42.1
    DKFZp566H0824 8363.007 1p36.23
    DLEU2L 63787.238 1p31-p22
    DMAP1 44451.712 1p34
    DNAJB4 78243.224 1p31
    DNAJC11 6616.818 1p36.23
    DNAJC16 15725.939 1p36.1
    DNAJC6 65503.018 1p31.3
    DNALI1 37795.107 1p35.1
    DPYD 97315.888 1p22
    DTL 210275.542 1q32
    DUSP10 219941.389 1q41
    DVL1 1260.521 1p36
    DYRK3 204875.504 1q32
    E2F2 23705.509 1p36
    ECE1 21416.327 1p36.1
    ECM1 148747.207 1q21
    EDN2 41717.033 1p34
    EFNA1 153366.973 1q21-q22
    EIF3I 32460.558 1p34.1
    EIF4G3 21005.561 1p36.12
    ELA3A 22200.736 1p36.12
    ELAVL4 50347.225 1p34
    ELF3 200246.313 1q32.2
    ELK4 203851.858 1q32
    ENO1 8843.650 1p36.2
    EPB41 29086.215 1p33-p32
    EPHA10 37954.233 1p34.3
    EPHA2 16323.419 1p36
    EPHA8 22762.591 1p36.12
    EPHB2 22909.918 1p36.1-p35
    EPHX1 224079.599 1q42.1
    ERMAP 43055.363 1p34.2
    ESRRG 214743.211 1q41
    ETV3 155369.600 1q21-q23
    ETV3L 155328.460 1q23.1
    EVI5 92746.841 1p22
    EXO1 240078.158 1q42-q43
    EXTL1 26220.858 1p36.1
    EXTL2 101110.529 1p21
    F11R 159231.625 1q21.2-q21.3
    F3 94767.461 1p22-p21
    F5 167747.816 1q23
    FAAH 46632.526 1p35-p34
    FABP3 31610.687 1p33-p32
    FAF1 50679.523 1pter-qter
    FAIM3 205144.354 1q32.1
    FAM129A 183026.789 1q25
    FAM5C 188333.420 1q31.1
    FASLG 170894.808 1q23
    FBLIM1 15963.581 1p36.13
    FBXO42 16449.146 1p36.23-p36.11
    FBXO6 11646.768 1p36.22
    FCER1A 157526.128 1q23
    FCER1G 159451.711 1q23
    FCGR2A 159741.844 1q23
    FCGR3A 159778.175 1q23
    FCGR3B 159859.612 1q23
    FCRL1 156031.277 1q21-q22
    FCRL2 155982.150 1q23.1
    FCRL3 155914.602 1q21-q22
    FCRL4 155810.163 1q21
    FCRL5 155749.791 1q21
    FCRLA 159943.386 1q23.3
    FDPS 153546.201 1q22
    FGR 27811.388 1p36.2-p36.1
    FLVCR1 211098.220 1q32.3
    FMO1 169484.287 1q23-q25
    FMO3 169326.660 1q24.3
    FMO4 169550.110 1q24.3
    FMO5 145124.462 1q21.1
    FMOD 201576.375 1q32
    FOXD2 47674.276 1p34-p32
    FOXD3 63561.318 1p31.3
    FOXE3 47654.331 1p32
    FOXJ3 42414.797 1p34.2
    FUCA1 24044.159 1p34
    FUSIP1 24165.526 1p36.11
    G0S2 207915.293 1q32.2-q41
    GADD45A 67923.471 1p31.2
    GALE 23994.676 1p36-p35
    GAS5 172096.303 1
    GBP1 89290.575 1p22.2
    GBP2 89345.898 1p22.2
    GBP5 89498.853 1p22.2
    GCLM 94125.178 1p21
    GDAP2 118213.563 1q11
    GFI1 92712.906 1p22
    GJA4 35031.186 1p35.1
    GLRX2 191332.224 1p31.2-q31.3
    GLUL 180618.292 1q31
    GNAI3 109892.709 1p13
    GNAT2 109947.412 1p13
    GNB1 1706.589 1p36.33
    GNG12 67939.737 1p31.3
    GNG4 233777.608 1q42.3
    GNG5 84736.594 1p22
    GNRHR2 144225.777 1q12
    GPSM2 109221.126 1p13.3
    GPX7 52840.632 1p32
    GSTM1 110031.965 1p13.3
    GSTM2 110012.214 1p13.3
    GSTM3 110078.077 1p13.3
    GSTM4 110000.226 1p13
    GSTM5 110056.388 1p13.3
    GUCA2A 42400.949 1p35-p34
    GUK1 226394.605 1q32-q41
    H6PD 9217.450 1p36
    HBXIP 110745.400 1p12
    HCRTR1 31857.228 1p33
    HDAC1 32530.295 1p34
    HDGF 154978.523 1q21-q23
    HECTD3 45240.807 1p34.1
    HEJ1 102110.154 1p22
    HES2 6397.883 1p36.31
    HES4 924.207 1p36
    HES5 2450.044 1p36.32
    HHAT 208568.229 1q32
    HIPK1 114273.519 1p13.1
    HIST2H2AB 148125.643 1q21.2
    HIST2H3A 148090.805 1q21.2
    HIST3H3 226679.169 1q42.13
    HMGN2 26671.489 1p36.1
    HNRNPR 23508.863 1p36.12
    HNRNPU 243080.225 1q44
    HSD11B1 207944.814 1q32-q41
    HSD17B7 161027.120 1q23
    HSD3B1 119851.349 1p13-p11
    HSD3B2 119759.296 1p13.1
    HSP90B3P 91873.155 1p22
    HSPA6 159760.660 1q23.3
    HSPB11 54159.822 1p32
    HSPB7 16213.110 1p36.23-p34.3
    HSPC157 22224.613 1p36.12
    HSPG2 22021.324 1p36.1-p35
    HTR1D 23390.975 1p36.3-p34.3
    HYI 43689.416 1p34.2
    ID3 23756.996 1p36.13-p36.12
    IER5 179324.261 1q25.3
    IFI16 157246.306 1q22
    IGSF8 158327.754 1q23.1
    IKBKE 204710.419 1q32.1
    IL10 205007.571 1q31-q32
    IL12RB2 67545.635 1p31.3-p31.2
    IL20 205105.777 1q32
    IL23R 67404.757 1p31.2
    IL24 205137.412 1q32
    IL6R 152644.293 1q21
    INPP5B 38098.956 1p34
    INSRR 155077.289 1q21-q23
    IQCC 32443.859 1p36.11-p34.2
    ISG15 938.710 1p36.33
    ITGA10 144236.347 1q21.1
    ITGB3BP 63679.050 1p31.3
    ITLN1 159112.954 1q21.3
    ITPKB 224886.014 1q42.12
    JAK1 65071.494 1p32.3-p31.3
    JARID1B 200963.155 1q32.1
    JMJD2A 43888.384 1p34.1
    JMJD4 225985.558 1q42.13
    JTB 152213.369 1q21
    KCNA2 110947.299 1p13
    KCNA3 111015.833 1p13.3
    KCND3 112119.977 1p13.2
    KCNJ9 158317.984 1q23.2
    KCTD3 213807.358 1q41
    KHDRBS1 32252.078 1p32
    KIAA0090 19417.171 1p36.13
    KIAA0562 3721.204 1p36.32
    KIAA1245 143309.866 1q21.1
    KIAA1324 109458.056 1p13.3
    KIF1B 10193.351 1p36.22
    KIF2C 44978.077 1p34.1
    KISS1 202426.092 1q32
    KLHL21 6573.371 1p36
    LAMB3 207854.841 1q32
    LAMC1 181259.218 1q31
    LAMC2 181421.797 1q25-q31
    LEFTY1 224140.605 1q42.1
    LEFTY2 224190.926 1q42.1
    LEMD1 203617.136 1q32.1
    LEPR 65658.906 1p31
    LEPRE1 42984.593 1p34.1
    LGALS8 234753.362 1q43
    LHX4 178466.065 1q25.3
    LIN28 26609.856 1p35.3
    LIN9 224485.486 1q42
    LMNA 154351.085 1q22
    LMO4 87566.739 1p22.3
    LPAR3 85051.674 1p22.3
    LRRC8D 90060.101 1p22.2
    LRRN2 202852.926 1q32.1
    MAD2L2 11657.124 1p36
    MAGI3 113734.998 1p12-p11.2
    MAP3K6 27554.257 1p36.11
    MAPKAPK2 204924.912 1q32
    MARCKSL1