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ABI1 (Abl-Interactor 1)

Identity

Other namesE3B1
eps8 SH3 domain binding protein
SSH3BP1
HGNC ABI1
Location 10p11.2
Location_base_pair Starts at 27075531 and ends at 27189965 bp from pter ( according to hg18-Mar_2006).
Local_order centromeric to the AF10 gene
 
  ABI1 (10p11) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Transcription different splicings (and different names for the gene)

Protein

Description 387 (ABI1) to 508 (e3B1) amino acids; 43 to 72 kDa; NH2- an homeodomain homologous region and a SH3 domain -COOH
Expression wide, in adults and in the embryo
Localisation cytosol
Function cell growth inhibitor; interacts withENL, another fusion partner of MLL, by binding it through its SH3 domain; the mouse Abi-1 protein is an AB-binding protein that suppresses v-ABL transforming activity

Implicated in

Entity t(10;11)(p11.2;q23) acute non lymphoblastic leukemia (ANLL) --> MLL- ABI1
Note only one case to date
Disease M4 ANLL in an infant
Oncogenesis MLL-ABI1 displays a transcriptional transactivator activity similar to MLL-ENL; they may act in a common oncogenic pathway
  

External links

Nomenclature
HGNCABI1   11320
Entrez_GeneABI1  10006  abl-interactor 1
Cards
AtlasABI1ID233
GeneCardsABI1
EnsemblENSG00000136754 [Gene_View]  ABI1 [Vega]
GenatlasABI1
Genomic and cartography
GoldenPathABI1  -  10p11.2   chr10:27075531-27189965 -  10p12.1   [Description]    (hg18-Mar_2006)
EnsemblABI1 - 10p12.1 [CytoView]
NCBIMapview
OMIM603050 Disease map [OMIM]
HomoloGeneABI1
Gene and transcription
GenbankAB040151 [ ENTREZ ]
GenbankAB209268 [ ENTREZ ]
GenbankAF001628 [ ENTREZ ]
GenbankAF006516 [ ENTREZ ]
GenbankAF260262 [ ENTREZ ]
RefSeqNM_001012750 [ SRS ]    NM_001012750 [ ENTREZ ]
RefSeqNM_001012751 [ SRS ]    NM_001012751 [ ENTREZ ]
RefSeqNM_001012752 [ SRS ]    NM_001012752 [ ENTREZ ]
RefSeqNM_005470 [ SRS ]    NM_005470 [ ENTREZ ]
RefSeqAC_000053 [ SRS ]    AC_000053 [ ENTREZ ]
RefSeqAC_000142 [ SRS ]    AC_000142 [ ENTREZ ]
RefSeqNC_000010 [ SRS ]    NC_000010 [ ENTREZ ]
RefSeqNT_008705 [ SRS ]    NT_008705 [ ENTREZ ]
RefSeqNW_001837931 [ SRS ]    NW_001837931 [ ENTREZ ]
RefSeqNW_924584 [ SRS ]    NW_924584 [ ENTREZ ]
CCDSABI1 CCDS - NCBI
AceViewABI1 AceView - NCBI
UnigeneHs.508148 [ SRS ]    Hs.508148 [ NCBI ]
Fast-db6119 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ59G41 [ SRS]    Q59G41 [ EXPASY ]     Q59G41 [ INTERPRO ]     Q59G41 [ UNIPROT ] Q59G41 [ VarSplice FASTA ]
PrositePS50002 SH3 [ SRS ]    PS50002 SH3 [ Expasy ]
PrositePS50192 T_SNARE [ SRS ]    PS50192 T_SNARE [ Expasy ]
InterproIPR012849 Abl-interactor_HHR [ SRS ]    IPR012849 Abl-interactor_HHR [ EBI ]
InterproIPR001452 SH3 [ SRS ]    IPR001452 SH3 [ EBI ]
InterproIPR000727 T_SNARE [ SRS ]    IPR000727 T_SNARE [ EBI ]
CluSTrQ59G41
PfamPF07815 Abi_HHR [ SRS ]    PF07815 Abi_HHR [ Sanger ]    pfam07815 [ NCBI-CDD ]
PfamPF00018 SH3_1 [ SRS ]    PF00018 SH3_1 [ Sanger ]    pfam00018 [ NCBI-CDD ]
SmartSM00326 SH3 [EMBL]
ProdomPD000066 SH3[INRA-Toulouse]
ProdomQ59G41 Q59G41_HUMAN [ Domain structure ]   Q59G41 Q59G41_HUMAN  [ sequences sharing at least 1 domain ]
BlocksQ59G41
HPRD04336
Protein Interaction databases
DIPQ59G41
IntActQ59G41
Polymorphism : SNP, mutations, diseases
OMIM603050    [ map ]   
GENETests603050
SNPABI1 [dbSNP-NCBI]  
SNPNM_001012750 [SNP-NCI]  
SNPNM_001012751 [SNP-NCI]  
SNPNM_001012752 [SNP-NCI]  
SNPNM_005470 [SNP-NCI]  
SNPABI1 [GeneSNPs - Utah]  ABI1] [HGBASE - SRS]
HAPMAPABI1 [HAPMAP]  
COSMICABI1 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbABI1 [Translocation breakpoints In Cancer]  
HGMDABI1
Genetic AssociationABI1
CDC HuGEABI1
General knowledge
Family BrowserABI1 [UCSC Family Browser]
SOURCENM_001012750
SOURCENM_001012751
SOURCENM_001012752
SOURCENM_005470
SMDHs.508148
SAGEHs.508148
GOintracellular [Amigo]  intracellular
GOsoluble fraction [Amigo]  soluble fraction
GOnucleus [Amigo]  nucleus
GOcytoplasm [Amigo]  cytoplasm
GOendoplasmic reticulum [Amigo]  endoplasmic reticulum
GOcytosol [Amigo]  cytosol
GOcytoskeleton [Amigo]  cytoskeleton
GOtransmembrane receptor protein tyrosine kinase signaling pathway [Amigo]  transmembrane receptor protein tyrosine kinase signaling pathway
GOcytoskeletal protein binding [Amigo]  cytoskeletal protein binding
GOnegative regulation of cell proliferation [Amigo]  negative regulation of cell proliferation
GOpeptidyl-tyrosine phosphorylation [Amigo]  peptidyl-tyrosine phosphorylation
GOsynaptosome [Amigo]  synaptosome
GOlamellipodium [Amigo]  lamellipodium
GOcell junction [Amigo]  cell junction
GOsynapse [Amigo]  synapse
PubGeneABI1
TreeFamABI1
CTD10006 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
ProbeABI1 Related clones (RZPD - Berlin)
PubMed
PubMed38 Pubmed reference(s) in Entrez

Bibliography

Isolation and characterization of e3B1, an eps8 binding protein that regulates cell growth.
Biesova Z, Piccoli C, Wong WT
Oncogene. 1997 ; 14 (2) : 233-241.
PMID 9010225
 
ABI-1, a human homolog to mouse Abl-interactor 1, fuses the MLL gene in acute myeloid leukemia with t(10;11)(p11.2;q23).
Taki T, Shibuya N, Taniwaki M, Hanada R, Morishita K, Bessho F, Yanagisawa M, Hayashi Y
Blood. 1998 ; 92 (4) : 1125-1130.
PMID 9694699
 
Identification of a candidate human spectrin Src homology 3 domain-binding protein suggests a general mechanism of association of tyrosine kinases with the spectrin-based membrane skeleton.
Ziemnicka-Kotula D, Xu J, Gu H, Potempska A, Kim KS, Jenkins EC, Trenkner E, Kotula L
The Journal of biological chemistry. 1998 ; 273 (22) : 13681-13692.
PMID 9593709
 
ENL, the MLL fusion partner in t(11;19), binds to the c-ABL interactor protein 1 (ABI1) that is fused to MLL in t(10;11).
Garcia Cuellar MP, Schreiner S, Birke M, Hamacher M, Slany RK
Blood. 1999 ; 94 (numero Suppl 1).
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written04-2000Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . ABI1 (Abl-Interactor 1). Atlas Genet Cytogenet Oncol Haematol. April 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/ABI1ID233.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:18:45 2008


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