Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

MLLT4 (myeloid/lymphoid or mixed-lineage leukemia (trithorax); translocated to, 4)

Identity

Other namesAF6 (ALL1 fused gene from chromosome 6)
MLLT4 (myeloid/lymphoid leukemia translocated to, n 4)
HGNC MLLT4
Location 6q27
Location_base_pair Starts at 167970520 and ends at 168108564 bp from pter ( according to hg18-Mar_2006).
 
  AF6 (6q27) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Transcription 8 kb mRNA; coding sequence: 4.8 kb

Protein

Description 1612 amino acids; contains a GLGF motif, which may have a role in membrane/cytoskeleton relations
Expression widely expressed
Localisation cytoplasmic
Function may be involved in molecular transport system; signal transduction
Homology cno (drosophila)

Implicated in

Entity t(6;11)(q27;q23)/ANLL --> MLL/AF6
Disease M4/M5 ANLL mainly
Prognosis poor
Cytogenetics may be overlooked; +8 is a frequent additional chromosome anomaly
Hybrid/Mutated Gene 5' MLL- 3' AF6
Abnormal Protein NH2-term MLL (with the AT hook and DNA binding motifs) and most of AF6
  

External links

Nomenclature
HGNCMLLT4   7137
Entrez_GeneMLLT4  4301  myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 4
Cards
AtlasAF6
GeneCardsMLLT4
EnsemblMLLT4 [Search_View]   ENSG00000130396 [Gene_View]
GenatlasMLLT4
GeneLynxMLLT4
eGenomeMLLT4
euGene4301
Genomic and cartography
GoldenPathMLLT4  -  6q27   chr6:167970520-168108564 +  6q27   [Description]    (hg18-Mar_2006)
EnsemblMLLT4 - 6q27 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneMLLT4
Gene and transcription
GenbankAB209420 [ ENTREZ ]
GenbankAF085836 [ ENTREZ ]
GenbankAK055689 [ ENTREZ ]
GenbankAK091815 [ ENTREZ ]
GenbankAL161973 [ ENTREZ ]
RefSeqNM_001040000 [ SRS ]    NM_001040000 [ ENTREZ ]
RefSeqNM_001040001 [ SRS ]    NM_001040001 [ ENTREZ ]
RefSeqNM_005936 [ SRS ]    NM_005936 [ ENTREZ ]
RefSeqAC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeqAC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeqNC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeqNT_007302 [ SRS ]    NT_007302 [ ENTREZ ]
RefSeqNW_001838994 [ SRS ]    NW_001838994 [ ENTREZ ]
RefSeqNW_923184 [ SRS ]    NW_923184 [ ENTREZ ]
AceViewMLLT4 AceView - NCBI
UnigeneHs.709178 [ SRS ]    Hs.709178 [ NCBI ]     HS709178 [ spliceNest ]
Fast-db17058 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP55196 [ SRS]    P55196 [ EXPASY ]     P55196 [ INTERPRO ]     P55196 [ UNIPROT ]
PrositePS51126 DILUTE [ SRS ]    PS51126 DILUTE [ Expasy ]
PrositePS50006 FHA_DOMAIN [ SRS ]    PS50006 FHA_DOMAIN [ Expasy ]
PrositePS50106 PDZ [ SRS ]    PS50106 PDZ [ Expasy ]
PrositePS50200 RA [ SRS ]    PS50200 RA [ Expasy ]
InterproIPR002710 DIL [ SRS ]    IPR002710 DIL [ EBI ]
InterproIPR000253 FHA [ SRS ]    IPR000253 FHA [ EBI ]
InterproIPR001478 PDZ [ SRS ]    IPR001478 PDZ [ EBI ]
InterproIPR000159 Ras-assoc [ SRS ]    IPR000159 Ras-assoc [ EBI ]
CluSTrP55196
PfamPF01843 DIL [ SRS ]    PF01843 DIL [ Sanger ]    pfam01843 [ NCBI-CDD ]
PfamPF00498 FHA [ SRS ]    PF00498 FHA [ Sanger ]    pfam00498 [ NCBI-CDD ]
PfamPF00595 PDZ [ SRS ]    PF00595 PDZ [ Sanger ]    pfam00595 [ NCBI-CDD ]
PfamPF00788 RA [ SRS ]    PF00788 RA [ Sanger ]    pfam00788 [ NCBI-CDD ]
SmartSM00240 FHA [EMBL]
SmartSM00228 PDZ [EMBL]
SmartSM00314 RA [EMBL]
ProdomPD003376 DIL[INRA-Toulouse]
ProdomP55196 AFAD_HUMAN [ Domain structure ]   P55196 AFAD_HUMAN  [ sequences sharing at least 1 domain ]
BlocksP55196
PDB1T2M [ SRS ]    1T2M [ PdbSum ],   1T2M [ IMB ]   1T2M [ RSDB ]
PDB1XZ9 [ SRS ]    1XZ9 [ PdbSum ],   1XZ9 [ IMB ]   1XZ9 [ RSDB ]
PDB2AIN [ SRS ]    2AIN [ PdbSum ],   2AIN [ IMB ]   2AIN [ RSDB ]
PDB2EXG [ SRS ]    2EXG [ PdbSum ],   2EXG [ IMB ]   2EXG [ RSDB ]
HPRD01164
Protein Interaction databases
DIPP55196
IntActP55196
Polymorphism : SNP, mutations, diseases
OMIM159559    [ map ]   
GENECLINICS159559
SNPMLLT4 [dbSNP-NCBI]  
SNPNM_001040000 [SNP-NCI]  
SNPNM_001040001 [SNP-NCI]  
SNPNM_005936 [SNP-NCI]  
SNPMLLT4 [GeneSNPs - Utah]  MLLT4] [HGBASE - SRS]
HAPMAPMLLT4 [HAPMAP]  
COSMICMLLT4 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbMLLT4 [Translocation breakpoints In Cancer]  
HGMDMLLT4
General knowledge
Family BrowserMLLT4 [UCSC Family Browser]
SOURCENM_001040000
SOURCENM_001040001
SOURCENM_005936
SMDHs.709178
SAGEHs.709178
GOmolecular_function [Amigo]  molecular_function
GOprotein binding [Amigo]  protein binding
GOcellular_component [Amigo]  cellular_component
GOintercellular junction [Amigo]  intercellular junction
GOcell adhesion [Amigo]  cell adhesion
GOsignal transduction [Amigo]  signal transduction
GOsignal transduction [Amigo]  signal transduction
GOcell-cell signaling [Amigo]  cell-cell signaling
GOprotein C-terminus binding [Amigo]  protein C-terminus binding
GObiological_process [Amigo]  biological_process
KEGGAdherens junction
KEGGTight junction
KEGGLeukocyte transendothelial migration
PubGeneMLLT4
TreeFamMLLT4
CTD4301 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
ProbeMLLT4 Related clones (RZPD - Berlin)
PubMed
PubMed48 Pubmed reference(s) in Entrez

Bibliography

Cloning of the ALL-1 fusion partner, the AF-6 gene, involved in acute myeloid leukemias with the t(6;11) chromosome translocation.
Prasad R, Gu Y, Alder H, Nakamura T, Canaani O, Saito H, Huebner K, Gale RP, Nowell PC, Kuriyama K
Cancer research. 1993 ; 53 (23) : 5624-5628.
PMID 8242616
 
Chromosome abnormalities in leukaemia: the 11q23 paradigm.
Young BD, Saha V
Cancer surveys. 1996 ; 28 : 225-245.
PMID 8977038
 
Molecular basis of 11q23 rearrangements in hematopoietic malignant proliferations.
Bernard OA, Berger R
Genes, chromosomes & cancer. 1995 ; 13 (2) : 75-85.
PMID 7542910
 
11q23 rearrangements in acute leukemia.
Rubnitz JE, Behm FG, Downing JR
Leukemia : official journal of the Leukemia Society of America, Leukemia Research Fund, U.K. 1996 ; 10 (1) : 74-82.
PMID 8558942
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written12-1997Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . MLLT4 (myeloid/lymphoid or mixed-lineage leukemia (trithorax); translocated to, 4). Atlas Genet Cytogenet Oncol Haematol. December 1997 .
URL : http://AtlasGeneticsOncology.org/Genes/AF6.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Oct 14 21:15:17 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.