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APC (adenomatous polyposis coli)

Identity

HGNC (Hugo) APC
Location 5q21
Location_base_pair Starts at 112101455 and ends at 112209835 bp from pter ( according to hg18-Mar_2006)  [Mapping]
 
  APC (5q21) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

Description 15 exons (with a particularly large 15th exon).
Transcription 9.0 kb mRNA; 8538 bp open reading frame.

Protein

Description 2843 amino acids; 310 kDa.
Function APC is a classical tumour suppressor protein. The APC gene product indirectly regulates transcription of a number of critical cell proliferation genes, through its interaction with the transcription factor beta catenin. APC binding to beta catenin leads to ubiquitin-mediated beta catenin destruction; loss of APC function increases transcription of beta catenin targets. These targets include cyclin D, C-myc, ephrins and caspases. APC also interacts with numerous actin and microtubule associated proteins. APC itself stabilizes microtubules. Homozygous APC truncation has been shown to affect chromosome attachment in cultured cells. Roles for APC in cell migration have been demonstrated in vitro and in mouse models.
Homology A second family member, APC2, is located on 19p13.3 (see non-annotated genes).

Mutations

Germinal Germline mutations of APC cause a spectrum of diseases under the broad category of familial adenomatous polyposis (FAP).
Mutations typically cluster in or just distal to the armadillo repeat region and truncate the protein near its middle. It is not known which is pathophysiologic - absence of the full-length protein or presence of the truncated version; evidence exists for both. The second hit creates another truncation or gene deletion. There is some evidence that the position of the first hit in the gene determines the pattern of the second hit.
Rare hypomorphic mutations cause attenuated polyposis.
Somatic Both copies of the APC gene are mutated in 80% of sporadic colorectal tumours.

Implicated in

Entity Familial Adenomatous Polyposis (FAP)
Disease Autosomal dominant disease in which patients develop thousands of colonic polyps during childhood and adolescence. Many of these will progress to cancers if not removed.
FAP encompasses other disease syndromes with extra-colonic manifestations.

In Gardner Syndrome, patients may develop the following extra-intestinal manifestations:

  • Gastric and duodenal malignancies.
  • Cancer of the pancreas, biliary tree, and gallbladder.
  • Hepatoblastoma.
  • Congenital hypertrophy of the retinal pigment epithelium (CHRPE), a benign hyperpigmentation beneath the retina that is typically asymptomatic.
  • Desmoid tumors, a tumor of the connective tissue that can cause morbidity and mortality by impinging on adjacent structures.
  • Osteomas and dental abnormalities.
  • Epidermoid cysts and other skin abnormalities.

    In a subset of patients with Turcot's syndrome, intestinal polyposis due to APC mutation is associated with brain tumors, especially meduloblastoma.

  • Prognosis Without treatment, the life expectancy is in the early 40s due to colon cancer. Treatment consists of regular screening, with polypectomy of large lesions. Due to the large number of polyps, eventual complete colectomy with or without proctosigmoidectomy is needed. Regular use of the cyclooxygenase inhibitor Sulindac and possibly other member of this class of drugs reduces the number of polyps. About ten percent of patients also experience significant morbidity from desmoid tumors.
      
    Entity Sporadic colorectal cancer
    Disease Somatic mutation of the APC gene is found in the majority of colorectal adenocarcinomas. Sporadic colorectal cancer is the third most frequent cancer in the world.
    Prognosis The prognosis depends on the stage of the disease. Stage I lesions are usually cured by surgery. There is controversy about the use of chemotherapy in Stage II disease. In Stage III disease, chemotherapy improves the five year survival from ~50% to ~60%.
    Oncogenesis Loss of normal APC function is known to be an early event in both familial and sporadic colon cancer pathogenesis, occurring at the pre-adenoma stage. Current discussion is focused on whether loss of APC function precedes, follows, or is entwined with chromosomal instability. Later events include abnormalities of K-ras and p53.

    Generally colon cancers show either chromosomal instability (CIN), which correlates with loss of APC function, or microsatellite instability (MIN), which correlates with loss of mismatch repair function, but not both.

      

    External links

    Nomenclature
    HGNC (Hugo)APC   583
    Entrez_Gene (NCBI)APC  324  adenomatous polyposis coli
    Cards
    AtlasAPC118
    GeneCards (Weizmann)APC
    Ensembl (Hinxton)ENSG00000134982 [Gene_View]  APC [Vega]
    AceView (NCBI)APC
    Genatlas (Paris)APC
    euGene (Indiana)324
    SOURCE (Stanford)NM_000038 NM_001127510 NM_001127511
    Gene Expression (Array Express) ENSG00000134982
    Genomic and cartography
    GoldenPath (UCSC)APC  -  5q21   chr5:112101455-112209835 +  5q21-q22   [Description]    (hg18-Mar_2006)
    EnsemblAPC - 5q21-q22 [CytoView]
    Mapping of homologs : NCBIAPC [Mapview]
    OMIM114500   135290   137215   155255   175100   276300   611731   
    Gene and transcription
    Gene : Genbank (Entrez)AB210001 AF038181 AI492038 AK289567 AK294544
    Reference sequence (RefSeq transcript) :SRSNM_000038 NM_001127510 NM_001127511
    Reference transcript : EntrezNM_000038 NM_001127510 NM_001127511
    RefSeq genomic : SRSAC_000048 AC_000137 NC_000005 NG_008481 NT_034772 NW_001838952 NW_922751
    RefSeq genomic : EntrezAC_000048 AC_000137 NC_000005 NG_008481 NT_034772 NW_001838952 NW_922751
    Consensus coding sequences : CCDS NCBIAPC
    Cluster EST : UnigeneHs.158932 [ SRS ] Hs.158932 [ NCBI ]
    Alternative Splicing : Fast-db (Paris)8297
    Protein : pattern, domain, 3D structure
    Protein : UniProt/SwissProtP25054 (SRS) P25054 (Expasy) P25054 (Uniprot)
    With graphics : InterProP25054
    Splice isoforms : VarSplice FASTAP25054(VarSplice FASTA)
    Domaine pattern : Prosite (SRS)ARM_REPEAT (PS50176)   
    Domain pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
    Domains : Interpro (SRS)APC_15aa    APC_basic    APC_crr    ARM-like    ARM-type_fold    Armadillo    EB1_bd    SAMP   
    Domains : Interpro (EBI)APC_15aa    APC_basic    APC_crr    ARM-like    ARM-type_fold    Armadillo    EB1_bd    SAMP   
    Related proteins : CluSTrP25054
    Domain families : Pfam SRSAPC_15aa (PF05972)    APC_basic (PF05956)    APC_crr (PF05923)    Arm (PF00514)    EB1_binding (PF05937)    SAMP (PF05924)   
    Domain families : Pfam SangerAPC_15aa (PF05972)    APC_basic (PF05956)    APC_crr (PF05923)    Arm (PF00514)    EB1_binding (PF05937)    SAMP (PF05924)   
    Domain families : Pfam NCBIpfam05972    pfam05956    pfam05923    pfam00514    pfam05937    pfam05924   
    Domain families : Smart EMBLARM (SM00185)  
    Blocks (Seattle)P25054
    Crystal structure of protein : PDB SRS1DEB    1EMU    1JPP    1M5I    1T08    1TH1    1V18   
    Crystal structure of protein : PDBSum1DEB    1EMU    1JPP    1M5I    1T08    1TH1    1V18   
    Crystal structure of protein : IMB1DEB    1EMU    1JPP    1M5I    1T08    1TH1    1V18   
    Crystal structure of protein : PDB RSDB1DEB    1EMU    1JPP    1M5I    1T08    1TH1    1V18   
    HPRD01439
    Protein Interaction databases
    DIP (DOE-UCLA)P25054
    IntAct (EBI)P25054
    Polymorphism : SNP, mutations, diseases
    Single Nucleotide Polymorphism (SNP) : dbSNP NCBIAPC
    SNP : GeneSNP UtahAPC
    SNP : HGBaseAPC
    Genetic variants : HAPMAPAPC
    Somatic Mutations in Cancer : COSMICAPC 
    Mutations and Diseases : HGMDAPC
    Hereditary diseases : OMIM114500    135290    137215    155255    175100    276300    611731   
    Hereditary diseases : GENETests114500    135290    137215    155255    175100    276300    611731   
    Diseases : Genetic AssociationAPC
    General knowledge
    Homologs : HomoloGeneAPC
    Homology/Alignments : Family Browser UCSCAPC
    Phylogenetic Trees/Animal Genes : TreeFamAPC
    Chemical/Protein Interactions : CTD324
    Keywords Ontology : AmiGOcytokinesis after mitosis  kinetochore  kidney development  hair follicle development  nucleus  cytoplasm  centrosome  cytosol  cytoplasmic microtubule  cell-cell adherens junction  tight junction  protein complex assembly  response to DNA damage stimulus  negative regulation of microtubule depolymerization  negative regulation of microtubule depolymerization  cell cycle arrest  mitotic metaphase/anaphase transition  mitotic cell cycle spindle assembly checkpoint  establishment or maintenance of cell polarity  axonogenesis  beta-catenin binding  microtubule binding  axis specification  anterior/posterior pattern formation  dorsal/ventral pattern formation  proximal/distal pattern formation  lateral plasma membrane  protein kinase regulator activity  protein kinase binding  cell junction  negative regulation of Wnt receptor signaling pathway  positive regulation of cell migration  growth cone  positive regulation of epithelial cell differentiation  beta-catenin destruction complex  positive regulation of microtubule polymerization  neuron projection development  cell projection membrane  positive regulation of pseudopodium assembly  T cell differentiation in the thymus  axon part  Axin-APC-beta-catenin-GSK3B complex  somatic stem cell maintenance  negative regulation of odontogenesis  response to drug  positive regulation of apoptosis  negative regulation of apoptosis  negative regulation of MAPKKK cascade  skin development  regulation of osteoblast differentiation  regulation of osteoclast differentiation  positive regulation of protein catabolic process  negative regulation of cyclin-dependent protein kinase activity  positive regulation of cell adhesion  muscle homeostasis  thymus development  negative regulation of epithelial cell proliferation  regulation of nitrogen compound metabolic process  chromosome organization  regulation of cell cycle  positive regulation of cell division  regulation of attachment of spindle microtubules to kinetochore  regulation of attachment of spindle microtubules to kinetochore  retina development in camera-type eye  Wnt receptor signaling pathway through beta-catenin  Wnt receptor signaling pathway through beta-catenin  tight junction assembly  
    Keywords Ontology : EGO-EBIcytokinesis after mitosis  kinetochore  kidney development  hair follicle development  nucleus  cytoplasm  centrosome  cytosol  cytoplasmic microtubule  cell-cell adherens junction  tight junction  protein complex assembly  response to DNA damage stimulus  negative regulation of microtubule depolymerization  negative regulation of microtubule depolymerization  cell cycle arrest  mitotic metaphase/anaphase transition  mitotic cell cycle spindle assembly checkpoint  establishment or maintenance of cell polarity  axonogenesis  beta-catenin binding  microtubule binding  axis specification  anterior/posterior pattern formation  dorsal/ventral pattern formation  proximal/distal pattern formation  lateral plasma membrane  protein kinase regulator activity  protein kinase binding  cell junction  negative regulation of Wnt receptor signaling pathway  positive regulation of cell migration  growth cone  positive regulation of epithelial cell differentiation  beta-catenin destruction complex  positive regulation of microtubule polymerization  neuron projection development  cell projection membrane  positive regulation of pseudopodium assembly  T cell differentiation in the thymus  axon part  Axin-APC-beta-catenin-GSK3B complex  somatic stem cell maintenance  negative regulation of odontogenesis  response to drug  positive regulation of apoptosis  negative regulation of apoptosis  negative regulation of MAPKKK cascade  skin development  regulation of osteoblast differentiation  regulation of osteoclast differentiation  positive regulation of protein catabolic process  negative regulation of cyclin-dependent protein kinase activity  positive regulation of cell adhesion  muscle homeostasis  thymus development  negative regulation of epithelial cell proliferation  regulation of nitrogen compound metabolic process  chromosome organization  regulation of cell cycle  positive regulation of cell division  regulation of attachment of spindle microtubules to kinetochore  regulation of attachment of spindle microtubules to kinetochore  retina development in camera-type eye  Wnt receptor signaling pathway through beta-catenin  Wnt receptor signaling pathway through beta-catenin  tight junction assembly  
    Pathways : BIOCARTAALK in cardiac myocytes [Genes]    Inactivation of Gsk3 by AKT causes accumulation of b-catenin in Alveolar Macrophages [Genes]    Multi-step Regulation of Transcription by Pitx2 [Genes]    Presenilin action in Notch and Wnt signaling [Genes]    TGF beta signaling pathway [Genes]    WNT Signaling Pathway [Genes]   
    Pathways : KEGGWnt signaling pathwayRegulation of actin cytoskeletonColorectal cancer
    Other databases
    Probes
    ProbeCancer Cytogenetics (Bari)
    Probes : ImagenesAPC Related clones (RZPD - Berlin)
    Literature
    PubMed434 Pubmed reference(s) in Entrez
    PubGeneAPC

    Bibliography

    Identification and characterization of the familial adenomatous polyposis coli gene.
    Groden J, Thliveris A, Samowitz W, Carlson M, Gelbert L, Albertsen H, Joslyn G, Stevens J, Spirio L, Robertson M
    Cell. 1991 ; 66 (3) : 589-600.
    PMID 1651174
     
    Mutations of chromosome 5q21 genes in FAP and colorectal cancer patients.
    Nishisho I, Nakamura Y, Miyoshi Y, Miki Y, Ando H, Horii A, Koyama K, Utsunomiya J, Baba S, Hedge P
    Science (New York, N.Y.). 1991 ; 253 (5020) : 665-669.
    PMID 1651563
     
    APC mutations occur early during colorectal tumorigenesis.
    Powell SM, Zilz N, Beazer-Barclay Y, Bryan TM, Hamilton SR, Thibodeau SN, Vogelstein B, Kinzler KW
    Nature. 1992 ; 359 (6392) : 235-237.
    PMID 1528264
     
    Lessons from hereditary colorectal cancer.
    Kinzler KW, Vogelstein B
    Cell. 1996 ; 87 (2) : 159-170.
    PMID 8861899
     
    Biology of the adenomatous polyposis coli tumor suppressor.
    Goss KH, Groden J
    Journal of clinical oncology : official journal of the American Society of Clinical Oncology. 2000 ; 18 (9) : 1967-1979.
    PMID 10784639
     
    The adenomatous polyposis coli protein: the Achilles heel of the gut epithelium.
    Nˆ§thke IS
    Annual review of cell and developmental biology. 2004 ; 20 : 337-366.
    PMID 15473844
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written04-1998Richard Hamelin
    INSERM U434, CEPH, 27, rue Juliette Dodu, 75010 Paris, France
    Updated03-2005Jennifer Tirnauer

    Citation

    This paper should be referenced as such :
    Hamelin P . APC (adenomatous polyposis coli). Atlas Genet Cytogenet Oncol Haematol. April 1998 .
    URL : http://AtlasGeneticsOncology.org/Genes/APC118.html
    Tirnauer J . APC (adenomatous polyposis coli). Atlas Genet Cytogenet Oncol Haematol. March 2005 .
    URL : http://AtlasGeneticsOncology.org/Genes/APC118.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Sat Feb 6 13:42:47 CET 2010

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