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ASPSCR1 (Alveolar soft part sarcoma critical region 1)

Identity

Other namesASPL (Alveolar soft part sarcoma locus)
HGNC ASPSCR1
Location 17q25
Location_base_pair Starts at 77528715 and ends at 77568571 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description 1872 bp cDNA
Transcription alternative splicing of 47 bp from exon 2 in the 5' untranslated region

Protein

Description 476 amino acids; contains an UBX domain, which may be related to the ubiquitylation pathway
Expression widely expressed in the adult; low expression in fetal tissues

Implicated in

Entity Alveolar soft part sarcoma with ASPSCR1 -TFE3 fusion
Cytogenetics der(X)t(X;17)(p11;q25) is consistently involved; it implicates: 1- the formation of a hybrid gene at the breakpoint, and also, 2- gain in Xp11-pter sequences, and loss of heterozygocity in 11q25-qter, with possible implications
Hybrid/Mutated Gene 5' ASPSCR1-3' TFE3; the reciprocal 5' TFE3 - 3' ASPSCR1 is most often absent. ASPSCR1 is fused in frame to TFE3 exon 3 or 4
Abnormal Protein NH2 term ASPSCR1, fused to the C term of TFE3
Oncogenesis might combine the effect of a fusion protein to that of gene(s) dosage
  
Entity primary renal ASPSCR1-TFE3 tumour
Disease a subset of renal cell carcinoma, which presents with a combination of alveolar soft part sarcoma-like features and epithelial features is found to carry this anomaly
Cytogenetics balanced t(X;17)(p11.2;q25), in contrast with what is found in the alveolar soft part sarcoma (see above)
Hybrid/Mutated Gene 5' ASPSCR1-3' TFE3
Abnormal Protein NH2 term ASPSCR1, fused to the C term of TFE3
  

External links

Nomenclature
HGNCASPSCR1   13825
Entrez_GeneASPSCR1  79058  alveolar soft part sarcoma chromosome region, candidate 1
Cards
AtlasASPSCR1ID358
GeneCardsASPSCR1
EnsemblENSG00000169696 [Gene_View]  ASPSCR1 [Vega]
GenatlasASPSCR1
Genomic and cartography
GoldenPathASPSCR1  -  17q25   chr17:77528715-77568571 +  17q25   [Description]    (hg18-Mar_2006)
EnsemblASPSCR1 - 17q25 [CytoView]
NCBIMapview
OMIM606236 Disease map [OMIM]
OMIM606243 Disease map [OMIM]
HomoloGeneASPSCR1
Gene and transcription
GenbankAF324219 [ ENTREZ ]
GenbankAK057403 [ ENTREZ ]
GenbankAK057851 [ ENTREZ ]
GenbankAK090682 [ ENTREZ ]
GenbankAK126967 [ ENTREZ ]
RefSeqNM_024083 [ SRS ]    NM_024083 [ ENTREZ ]
RefSeqAC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
RefSeqAC_000149 [ SRS ]    AC_000149 [ ENTREZ ]
RefSeqNC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
RefSeqNT_010663 [ SRS ]    NT_010663 [ ENTREZ ]
RefSeqNW_001838459 [ SRS ]    NW_001838459 [ ENTREZ ]
RefSeqNW_926918 [ SRS ]    NW_926918 [ ENTREZ ]
CCDSASPSCR1 CCDS - NCBI
AceViewASPSCR1 AceView - NCBI
UnigeneHs.298351 [ SRS ]    Hs.298351 [ NCBI ]
Fast-db15722 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtQ6ZST5 [ SRS]    Q6ZST5 [ EXPASY ]     Q6ZST5 [ INTERPRO ]     Q6ZST5 [ UNIPROT ] Q6ZST5 [ VarSplice FASTA ]
CluSTrQ6ZST5
BlocksQ6ZST5
HPRD06947
Protein Interaction databases
DIPQ6ZST5
IntActQ6ZST5
Polymorphism : SNP, mutations, diseases
OMIM606236    [ map ]   
OMIM606243    [ map ]   
GENETests606236
GENETests606243
SNPASPSCR1 [dbSNP-NCBI]  
SNPNM_024083 [SNP-NCI]  
SNPASPSCR1 [GeneSNPs - Utah]  ASPSCR1] [HGBASE - SRS]
HAPMAPASPSCR1 [HAPMAP]  
COSMICASPSCR1 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbASPSCR1 [Translocation breakpoints In Cancer]  
HGMDASPSCR1
Genetic AssociationASPSCR1
CDC HuGEASPSCR1
General knowledge
Family BrowserASPSCR1 [UCSC Family Browser]
SOURCENM_024083
SMDHs.298351
SAGEHs.298351
GOmolecular_function [Amigo]  molecular_function
GOcellular_component [Amigo]  cellular_component
GObiological_process [Amigo]  biological_process
GOendomembrane system [Amigo]  endomembrane system
GOmembrane [Amigo]  membrane
PubGeneASPSCR1
TreeFamASPSCR1
CTD79058 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
ProbeASPSCR1 Related clones (RZPD - Berlin)
PubMed
PubMed10 Pubmed reference(s) in Entrez

Bibliography

The der(17)t(X;17)(p11;q25) of human alveolar soft part sarcoma fuses the TFE3 transcription factor gene to ASPL, a novel gene at 17q25.
Ladanyi M, Lui MY, Antonescu CR, Krause-Boehm A, Meindl A, Argani P, Healey JH, Ueda T, Yoshikawa H, Meloni-Ehrig A, Sorensen PH, Mertens F, Mandahl N, van den Berghe H, Sciot R, Cin PD, Bridge J
Oncogene. 2001 ; 20 (1) : 48-57.
PMID 11244503
 
Primary renal neoplasms with the ASPL-TFE3 gene fusion of alveolar soft part sarcoma: a distinctive tumor entity previously included among renal cell carcinomas of children and adolescents.
Argani P, Antonescu CR, Illei PB, Lui MY, Timmons CF, Newbury R, Reuter VE, Garvin AJ, Perez-Atayde AR, Fletcher JA, Beckwith JB, Bridge JA, Ladanyi M
The American journal of pathology. 2001 ; 159 (1) : 179-192.
PMID 11438465
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-2001Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . ASPSCR1 (Alveolar soft part sarcoma critical region 1). Atlas Genet Cytogenet Oncol Haematol. August 2001 .
URL : http://AtlasGeneticsOncology.org/Genes/ASPSCR1ID358.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:19:43 2008


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