Atlas of Genetics and Cytogenetics in Oncology and Haematology


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BCL2 (B-cell leukemia/lymphoma 2)

Identity

HGNC (Hugo) BCL2
Location 18q21
Location_base_pair Starts at 58941559 and ends at 59137593 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

 
  BCL2 (18q21) PAC 248E24 - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are wellcome: contact M Rocchi
Description telomere to centromere orientation; 3 exons; exon 1 and the 3' part of exon 3 are non coding
Transcription 2 alternative transcripts (a and b); 5. 1 kb mRNA; coding sequence: CDS 1459...2178

Protein

Description 25 kDa; 205 amino acids (BCL2b) or 239 amino acids (BCL2a, which has, in addition, a hydrophobic tail for membrane anchorage; this tail seems necessary for anti apoptotic ability); contain homo/heterodimerization domains (BH) and NH domains.
Expression wide; in B and T cells in particular
Localisation mainly in the mitochondrial membrane; other membranes
Function antiapoptosis, through a possibly complex process; dimerization, especially with BAX; role of the BCL2 anti-apoptosis members in forming complexes with caspase-9 and APAF1 (homolog of the nematode CED-4), which prevent them to initiate the protease cascade (through caspase-3 cytochrome C dependent activation and) leading to apoptosis
Homology with Ced9 (nematode C. elegans); with other member of the BCL2 family: 1- apoptosis inhibitors BCLX, MCL1, and 2- apoptosis inducers BAX, BAD, BIK, ...

Implicated in

Entity t(14;18)(q32;q21)/B-cell malignancies --> IgH - BCL2
Disease B- cell NHL mainly; found in 80 to 90 % of follicular lymphomas, 30% of diffuse large cell lymphomas
Prognosis according to the cyto-pathologic subtype (small cleaved cell follicular lymphomas have a good prognosis; large cell lymphomas have a worse prognosis; the t(14;18) may have no prognostic significance)
Cytogenetics complex karyotypes are frequent with +7, del(6q), +12, + X,...
Hybrid/Mutated Gene 5' BCL2 translocated on chromosome 14 near JH (junctions genes of IgH) and C in 3'
Abnormal Protein no fusion protein, but promoter exchange; the immunoglobulin gene enhancer stimulates the expression of BCL2
Oncogenesis as BCL2 is an apoptosis inhibitor, cell death is delayed, and there is cell accumulation (more than real transformation)
  
Entity chronic lymphocytic leukaemia
Oncogenesis BCL2 is hypomethylated in the promotor region, and, therefore, overexpressed
  

External links

Nomenclature
HGNC (Hugo)BCL2   990
Entrez_Gene (NCBI)BCL2  596  B-cell CLL/lymphoma 2
Cards
AtlasBCL2ID49
GeneCards (Weizmann)BCL2
Ensembl (Hinxton)ENSG00000171791 [Gene_View]  BCL2 [Vega]
AceView (NCBI)BCL2
Genatlas (Paris)BCL2
euGene (Indiana)596
SOURCE (Stanford)NM_000633 NM_000657
Gene Expression (Array Express) ENSG00000171791
Genomic and cartography
GoldenPath (UCSC)BCL2  -  18q21   chr18:58941559-59137593 -  18q21.33|18q21.3   [Description]    (hg18-Mar_2006)
EnsemblBCL2 - 18q21.33|18q21.3 [CytoView]
Mapping of homologs : NCBIBCL2 [Mapview]
OMIM151430   
Gene and transcription
Gene : Genbank (Entrez)AF401211 AI401297 BC027258 DQ891470 DQ894654
Reference sequence (RefSeq transcript) :SRSNM_000633 NM_000657
Reference transcript : EntrezNM_000633 NM_000657
RefSeq genomic : SRSAC_000061 AC_000150 NC_000018 NG_009361 NT_025028 NW_001838469 NW_927106
RefSeq genomic : EntrezAC_000061 AC_000150 NC_000018 NG_009361 NT_025028 NW_001838469 NW_927106
Consensus coding sequences : CCDS NCBIBCL2
Cluster EST : UnigeneHs.720968 [ SRS ] Hs.720968 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5554
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP10415 (SRS) P10415 (Expasy) P10415 (Uniprot)
With graphics : InterProP10415
Splice isoforms : VarSplice FASTAP10415(VarSplice FASTA)
Domaine pattern : Prosite (SRS)BCL2_FAMILY (PS50062)    BH1 (PS01080)    BH2 (PS01258)    BH3 (PS01259)    BH4_1 (PS01260)    BH4_2 (PS50063)   
Domain pattern : Prosite (Expaxy)BCL2_FAMILY (PS50062)    BH1 (PS01080)    BH2 (PS01258)    BH3 (PS01259)    BH4_1 (PS01260)    BH4_2 (PS50063)   
Domains : Interpro (SRS)Apop_reg_Bcl2    BCL2_apoptsis    Bcl2_BH    Bcl2_BH1_motif_CS    Bcl2_BH2_motif_CS    Bcl2_BH3_motif_CS    Bcl2_BH4    Bcl2_BH4_motif_CS    Bcl2_reg   
Domains : Interpro (EBI)Apop_reg_Bcl2    BCL2_apoptsis    Bcl2_BH    Bcl2_BH1_motif_CS    Bcl2_BH2_motif_CS    Bcl2_BH3_motif_CS    Bcl2_BH4    Bcl2_BH4_motif_CS    Bcl2_reg   
Related proteins : CluSTrP10415
Domain families : Pfam SRSBcl-2 (PF00452)    BH4 (PF02180)   
Domain families : Pfam SangerBcl-2 (PF00452)    BH4 (PF02180)   
Domain families : Pfam NCBIpfam00452    pfam02180   
Domain families : Smart EMBLBCL (SM00337)  BH4 (SM00265)  
Blocks (Seattle)P10415
Crystal structure of protein : PDB SRS1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L   
Crystal structure of protein : PDBSum1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L   
Crystal structure of protein : IMB1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L   
Crystal structure of protein : PDB RSDB1G5M    1GJH    1YSW    2O21    2O22    2O2F    2W3L   
HPRD01045
Protein Interaction databases
DIP (DOE-UCLA)P10415
IntAct (EBI)P10415
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIBCL2
SNP : GeneSNP UtahBCL2
SNP : HGBaseBCL2
Genetic variants : HAPMAPBCL2
Somatic Mutations in Cancer : COSMICBCL2 
Translocation Breakpoints in Cancer : TICdbBCL2 
Mutations and Diseases : HGMDBCL2
Hereditary diseases : OMIM151430   
Hereditary diseases : GENETests151430   
Diseases : Genetic AssociationBCL2
General knowledge
Homologs : HomoloGeneBCL2
Homology/Alignments : Family Browser UCSCBCL2
Phylogenetic Trees/Animal Genes : TreeFamBCL2
Chemical/Protein Interactions : CTD596
Keywords Ontology : AmiGOG1/S transition of mitotic cell cycle  protein phosphatase type 2A complex  cell morphogenesis  ovarian follicle development  ureteric bud development  branching involved in ureteric bud morphogenesis  behavioral fear response  response to hypoxia  B cell homeostasis  release of cytochrome c from mitochondria  release of cytochrome c from mitochondria  regulation of cell-matrix adhesion  protease binding  lymphoid progenitor cell differentiation  B cell lineage commitment  T cell lineage commitment  immune system development  renal system process  intracellular  membrane fraction  nucleus  cytoplasm  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  microsome  cytosol  calcineurin complex  protein amino acid dephosphorylation  melanin metabolic process  oxygen and reactive oxygen species metabolic process  regulation of nitrogen utilization  anti-apoptosis  humoral immune response  response to oxidative stress  actin filament organization  female pregnancy  cell aging  response to nutrient  transcription factor binding  cell death  positive regulation of cell proliferation  male gonad development  activation of pro-apoptotic gene products  response to radiation  response to heat  response to external stimulus  response to toxin  post-embryonic development  organ morphogenesis  response to inorganic substance  response to iron ion  response to aluminum ion  response to UV-B  response to gamma radiation  regulation of gene expression  negative regulation of calcium ion transport into cytosol  regulation of glycoprotein biosynthetic process  mesenchymal cell development  positive regulation of neuron maturation  positive regulation of smooth muscle cell migration  membrane  integral to membrane  cell-cell adhesion  transcription activator activity  peptidyl-threonine phosphorylation  cochlear nucleus development  gland morphogenesis  hemopoiesis  negative regulation of ossification  negative regulation of cell growth  negative regulation of cell migration  response to caffeine  hair follicle morphogenesis  axon regeneration  regulation of protein stability  nuclear membrane  endoplasmic reticulum calcium ion homeostasis  glomerulus development  negative regulation of cellular pH reduction  regulation of protein localization  negative regulation of myeloid cell apoptosis  T cell differentiation in the thymus  positive regulation of peptidyl-serine phosphorylation  negative regulation of osteoblast proliferation  response to cytokine stimulus  response to nicotine  organ growth  positive regulation of multicellular organism growth  B cell proliferation  response to drug  response to hydrogen peroxide  protein homodimerization activity  T cell homeostasis  positive regulation of catalytic activity  myelin sheath  CD8-positive, alpha-beta T cell lineage commitment  response to peptide hormone stimulus  regulation of protein homodimerization activity  regulation of protein heterodimerization activity  negative regulation of neuron apoptosis  ear development  response to estrogen stimulus  regulation of viral genome replication  response to ethanol  positive regulation of melanocyte differentiation  negative regulation of mitotic cell cycle  negative regulation of retinal cell programmed cell death  response to copper ion  regulation of mitochondrial membrane permeability  protein heterodimerization activity  focal adhesion assembly  positive regulation of pigmentation during development  spleen development  thymus development  gut morphogenesis  developmental growth  oocyte development  positive regulation of skeletal muscle fiber development  pigment granule organization  homeostasis of number of cells within a tissue  response to corticosterone stimulus  BH3 domain binding  response to folic acid  defense response to virus  regulation of cell cycle  response to protein stimulus  regulation of mitochondrial membrane potential  negative regulation of mitochondrial depolarization  regulation of calcium ion transport  apoptosis in response to endoplasmic reticulum stress  
Keywords Ontology : EGO-EBIG1/S transition of mitotic cell cycle  protein phosphatase type 2A complex  cell morphogenesis  ovarian follicle development  ureteric bud development  branching involved in ureteric bud morphogenesis  behavioral fear response  response to hypoxia  B cell homeostasis  release of cytochrome c from mitochondria  release of cytochrome c from mitochondria  regulation of cell-matrix adhesion  protease binding  lymphoid progenitor cell differentiation  B cell lineage commitment  T cell lineage commitment  immune system development  renal system process  intracellular  membrane fraction  nucleus  cytoplasm  mitochondrion  mitochondrial outer membrane  mitochondrial outer membrane  mitochondrial outer membrane  endoplasmic reticulum  endoplasmic reticulum membrane  microsome  cytosol  calcineurin complex  protein amino acid dephosphorylation  melanin metabolic process  oxygen and reactive oxygen species metabolic process  regulation of nitrogen utilization  anti-apoptosis  humoral immune response  response to oxidative stress  actin filament organization  female pregnancy  cell aging  response to nutrient  transcription factor binding  cell death  positive regulation of cell proliferation  male gonad development  activation of pro-apoptotic gene products  response to radiation  response to heat  response to external stimulus  response to toxin  post-embryonic development  organ morphogenesis  response to inorganic substance  response to iron ion  response to aluminum ion  response to UV-B  response to gamma radiation  regulation of gene expression  negative regulation of calcium ion transport into cytosol  regulation of glycoprotein biosynthetic process  mesenchymal cell development  positive regulation of neuron maturation  positive regulation of smooth muscle cell migration  membrane  integral to membrane  cell-cell adhesion  transcription activator activity  peptidyl-threonine phosphorylation  cochlear nucleus development  gland morphogenesis  hemopoiesis  negative regulation of ossification  negative regulation of cell growth  negative regulation of cell migration  response to caffeine  hair follicle morphogenesis  axon regeneration  regulation of protein stability  nuclear membrane  endoplasmic reticulum calcium ion homeostasis  glomerulus development  negative regulation of cellular pH reduction  regulation of protein localization  negative regulation of myeloid cell apoptosis  T cell differentiation in the thymus  positive regulation of peptidyl-serine phosphorylation  negative regulation of osteoblast proliferation  response to cytokine stimulus  response to nicotine  organ growth  positive regulation of multicellular organism growth  B cell proliferation  response to drug  response to hydrogen peroxide  protein homodimerization activity  T cell homeostasis  positive regulation of catalytic activity  myelin sheath  CD8-positive, alpha-beta T cell lineage commitment  response to peptide hormone stimulus  regulation of protein homodimerization activity  regulation of protein heterodimerization activity  negative regulation of neuron apoptosis  ear development  response to estrogen stimulus  regulation of viral genome replication  response to ethanol  positive regulation of melanocyte differentiation  negative regulation of mitotic cell cycle  negative regulation of retinal cell programmed cell death  response to copper ion  regulation of mitochondrial membrane permeability  protein heterodimerization activity  focal adhesion assembly  positive regulation of pigmentation during development  spleen development  thymus development  gut morphogenesis  developmental growth  oocyte development  positive regulation of skeletal muscle fiber development  pigment granule organization  homeostasis of number of cells within a tissue  response to corticosterone stimulus  BH3 domain binding  response to folic acid  defense response to virus  regulation of cell cycle  response to protein stimulus  regulation of mitochondrial membrane potential  negative regulation of mitochondrial depolarization  regulation of calcium ion transport  apoptosis in response to endoplasmic reticulum stress  
Pathways : BIOCARTAHIV-I Nef: negative effector of Fas and TNF [Genes]    Regulation of BAD phosphorylation [Genes]    Ceramide Signaling Pathway [Genes]    Apoptotic Signaling in Response to DNA Damage [Genes]    Induction of apoptosis through DR3 and DR4/5 Death Receptors [Genes]    Stress Induction of HSP Regulation [Genes]    IL-2 Receptor Beta Chain in T cell Activation [Genes]    IL-7 Signal Transduction [Genes]    Keratinocyte Differentiation [Genes]    Melanocyte Development and Pigmentation [Genes]    Role of Mitochondria in Apoptotic Signaling [Genes]    p53 Signaling Pathway [Genes]    Prion Pathway [Genes]    Telomeres, Telomerase, Cellular Aging, and Immortality [Genes]   
Pathways : KEGGNeurodegenerative DisordersApoptosisFocal adhesionAmyotrophic lateral sclerosis (ALS)Prion diseaseColorectal cancer
Other databases
Probes
ProbeBCL2 (18q21) in normal cells (Bari)
Probes : ImagenesBCL2 Related clones (RZPD - Berlin)
Literature
PubMed499 Pubmed reference(s) in Entrez
PubGeneBCL2

Bibliography

Cloning the chromosomal breakpoint of t(14;18) human lymphomas: clustering around JH on chromosome 14 and near a transcriptional unit on 18.
Bakhshi A, Jensen JP, Goldman P, Wright JJ, McBride OW, Epstein AL, Korsmeyer SJ
Cell. 1985 ; 41 (3) : 899-906.
PMID 3924412
 
Nucleotide sequence of a t(14;18) chromosomal breakpoint in follicular lymphoma and demonstration of a breakpoint-cluster region near a transcriptionally active locus on chromosome 18.
Cleary ML, Sklar J
Proceedings of the National Academy of Sciences of the United States of America. 1985 ; 82 (21) : 7439-7443.
PMID 2865728
 
Bcl-2 heterodimerizes in vivo with a conserved homolog, Bax, that accelerates programmed cell death.
Oltvai ZN, Milliman CL, Korsmeyer SJ
Cell. 1993 ; 74 (4) : 609-619.
PMID 8358790
 
Structure, function, and regulation of human cAMP-dependent protein kinases.
Taskˆ©n K, Skˆ€lhegg BS, Taskˆ©n KA, Solberg R, Knutsen HK, Levy FO, Sandberg M, Orstavik S, Larsen T, Johansen AK, Vang T, Schrader HP, Reinton NT, Torgersen KM, Hansson V, Jahnsen T
Advances in second messenger and phosphoprotein research. 1997 ; 31 : 191-204.
PMID 9344252
 
Bcl-XL interacts with Apaf-1 and inhibits Apaf-1-dependent caspase-9 activation.
Hu Y, Benedict MA, Wu D, Inohara N, Nˆ†ˆ±ez G
Proceedings of the National Academy of Sciences of the United States of America. 1998 ; 95 (8) : 4386-4391.
PMID 9539746
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written05-1998Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . BCL2 (B-cell leukemia/lymphoma 2). Atlas Genet Cytogenet Oncol Haematol. May 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/BCL2ID49.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 6 13:42:53 CET 2010

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