Atlas of Genetics and Cytogenetics in Oncology and Haematology


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COL1A1 (collagen, type I, alpha 1)

Identity

Hugo COL1A1
Location 17q21.31-q22
Local_order Telomeric to MEOX1 (mesenchyme homeo box 1), centromeric to MVWF (Modifier of von Willebrand factor)
 
  COL1A1 (17q21) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

 
Description The COL1A1 gene is 18 kb in size and is composed of 52 exons. Exons 6 to 49 encode the alpha helical domain. Most of these exons were 45 bp, 54 bp or multiple of 45 bp or 54 bp
Transcription Two RNA of 5,8 kb and 4,8 kb differing by their 3 terminus non coding sequence and giving rise to a single 140 kDa protein

Protein

 
Description 1464 amino acids. The a1 (I) chains of the type I collagen are synthesised as procollagen molecules containing amino and carboxy-terminal propeptides, wich are removed by site-specific endopeptidase. The central triple helical domain is formed by 338 repeats of a Gly-X-Y triplet where X and Y are often a proline.
Expression Type I collagen is the most abundant protein in vertebrates and a constituent of the extra cellular matrix in connective tissue of bone, skin, tendon, ligament and dentine. It is mostly produced and secreted by fibroblasts and osteoblasts.
Localisation Extra-cellular matrix
Function Two pro a1 (I) chain associate in trimers with one pro a2 (I) chain to form the type I collagen fibrils after proteolysis.
Homology Member of the collagen family.

Implicated in

Entity
  • Dermatofibrosarcoma Protuberans (DP), also called Darier Ferrand tumour or Darier-Hoffmann tumour.
  • Giant cell fibrosarcoma (GCF) (juvenile form of DP).
  • Bednar tumour (pigmented variant of DP)
  • Disease Infiltrative skin tumours of intermediate malignancy
    Prognosis The prognosis is usually favourable. These tumours are locally aggressive and highly recurrent, but metastases or tumour-related deaths are extremely rare.
    Cytogenetics Dermatofibrosarcoma Protuberans, Giant Cell fibrosarcoma and Bednar tumours present specific cytogenetic features such as reciprocal translocations t(17;22)(q22;q13.1) ( Fig A) or, more often, supernumerary ring chromosomes derived from t(17;22) (B). As shown by FISH analysis, the ring chromosomes contain chromosome 22 centromere and low-level amplification of 22cen-q13.1 and 17q22-qter sequences. To note, in most cases, the derivative chromosome 17 is not present. In contrast, several copies of the derivative chromosome 22 are generally observed.in addition to two apparently normal chromosomes 17
     
    Hybrid/Mutated Gene
  • Both rings and der(22) translocated chromosomes present a same molecular rearrangement that fuses the collagen type I alpha 1(COL1A1) and the platelet-derived growth factor B chain (PDGFB) genes (C).
  • In all DP and GCF cases studied, the t(17;22)translocation results in chimerical COL1A1/PDGFB mRNA production, in which the PDGFB exon 1 is deleted and replaced by a variable segment of COL1A1 mRNA sequence. In the 32 cases tested the fusion mRNA was an in-frame fusion of one of the COL1A1 exons (varying from exon 7 to exon 47) to PDGFB exon 2 (D).
  • Abnormal Protein
  • COL1A1 and PDGFB are both encoded as pro-peptides, which are processed by proteolytic cleavage at N and C-terminus, to give mature proteins. Sequences analyses of the chimerical COL1A1/PDGFB fusion transcripts showed that the COL1A1/PDGFB putative proteins displayed a pro-peptide structure, which preserved the N-terminus COL1A1 pro-peptide containing the signal peptide and the N and C-terminus PDGFB maturation cleavage sites.
  • The functional and structural properties of the COL1A1/PDGFB fusion protein were characterized by generating stable fibroblastic cell lines that expressed tumour-derived COL1A1/PDGFB chimerical genes. The diagram herein given presents the COL1A1/PDGFB chimerical protein encoded by the T94796 tumour-derived chimerical COL1A1/PDGFB cDNA sequence
  •  
    A chimerical COL1A1/PDGFB cDNA sequence fusing COL1A1 exon 29 to PDGFB exon 2 was isolated from the DP T94796 tumour and stably transfected in the Chinese hamster lung fibroblastic cell line PS200 (E).
    The T94796 COL1A1/PDGFB chimerical protein sequence retained the COL1A1 N-terminus processing site encoded by the COL1A1 exon 6 and the N and C-terminus PDGFB processing sites encoded by the PDGFB exons 3 and 6 respectively (F).
    Mutagenesis experiments and immunodetection with anti-PDGFBB and specific anti-COL1A1/PDGFB antibodies showed that COL1A1/PDGFB expressing cells produced 116 kD chimerical COL1A1/PDGFB precursors chains, which formed dimers and were processed to give active 30 kD PDGFB-like dimers (G).
    Oncogenesis
  • Transfected cells lines expressing the chimerical T94796-COL1A1/PDGFB proteins became independent upon growth factors, including PDGFB, and induced tumours formation in nude mice. In addition, it was shown that the COL1A1/PDGFB stable clones cells contained activated PDGF b-receptors and that the conditioned media from COL1A1/PDGFB transfected cells were able to stimulate fibroblastic cells growth. Anti-PDGFBB antibodies neutralized this effect.
  • These results strongly suggest that the COL1A1/PDGFB chimerical gene expression associated with DP, contributes to tumour formation through ectopic production of mature PDGFB and the formation of an autocrine loop.
  •   

    Breakpoints

     
     

    External links

    Nomenclature
    HugoCOL1A1
    GDBCOL1A1
    Entrez_GeneCOL1A1  1277  collagen, type I, alpha 1
    Cards
    AtlasCOL1A1ID186
    GeneCardsCOL1A1
    EnsemblCOL1A1 [Search_View]   ENSG00000108821 [Gene_View]
    GenatlasCOL1A1
    GeneLynxCOL1A1
    eGenomeCOL1A1
    euGene1277
    Genomic and cartography
    GoldenPathCOL1A1  -     chr17:45616458-45633999 -  17q21.33   [Description]    (hg18-Mar_2006)
    EnsemblCOL1A1 - 17q21.33 [CytoView]
    NCBIMapview
    OMIMDisease map [OMIM]
    HomoloGeneCOL1A1
    Gene and transcription
    GenbankAB209597 [ ENTREZ ]
    GenbankBC036531 [ ENTREZ ]
    GenbankDQ893571 [ ENTREZ ]
    GenbankEU176569 [ ENTREZ ]
    GenbankJ00110 [ ENTREZ ]
    RefSeqNM_000088 [ SRS ]    NM_000088 [ ENTREZ ]
    RefSeqAC_000060 [ SRS ]    AC_000060 [ ENTREZ ]
    RefSeqNC_000017 [ SRS ]    NC_000017 [ ENTREZ ]
    RefSeqNT_010783 [ SRS ]    NT_010783 [ ENTREZ ]
    RefSeqNW_926894 [ SRS ]    NW_926894 [ ENTREZ ]
    AceViewCOL1A1 AceView - NCBI
    UnigeneHs.172928 [ SRS ]    Hs.172928 [ NCBI ]     HS172928 [ spliceNest ]
    Fast-db12312 (alternative variants)
    Protein : pattern, domain, 3D structure
    SwissProtP02452 [ SRS]    P02452 [ EXPASY ]     P02452 [ INTERPRO ]
    PrositePS01208 VWFC_1 [ SRS ]    PS01208 VWFC_1 [ Expasy ]
    PrositePS50184 VWFC_2 [ SRS ]    PS50184 VWFC_2 [ Expasy ]
    InterproIPR008161 Clg_helix [ SRS ]    IPR008161 Clg_helix [ EBI ]
    InterproIPR008160 Collagen [ SRS ]    IPR008160 Collagen [ EBI ]
    InterproIPR000885 Fib_collagen_C [ SRS ]    IPR000885 Fib_collagen_C [ EBI ]
    InterproIPR001007 VWF_C [ SRS ]    IPR001007 VWF_C [ EBI ]
    CluSTrP02452
    PfamPF01410 COLFI [ SRS ]    PF01410 COLFI [ Sanger ]    pfam01410 [ NCBI-CDD ]
    PfamPF01391 Collagen [ SRS ]    PF01391 Collagen [ Sanger ]    pfam01391 [ NCBI-CDD ]
    PfamPF00093 VWC [ SRS ]    PF00093 VWC [ Sanger ]    pfam00093 [ NCBI-CDD ]
    SmartSM00038 COLFI [EMBL]
    SmartSM00214 VWC [EMBL]
    ProdomPD000007 Clg_helix[INRA-Toulouse]
    ProdomP02452 CO1A1_HUMAN [ Domain structure ]   P02452 CO1A1_HUMAN  [ sequences sharing at least 1 domain ]
    ProdomPD000007[INRA-Toulouse]
    ProdomP02452 CO1A1_HUMAN [ Domain structure ]   P02452 CO1A1_HUMAN  [ sequences sharing at least 1 domain ]
    BlocksP02452
    PDB1Q7D [ SRS ]    1Q7D [ PdbSum ],   1Q7D [ IMB ]   1Q7D [ RSDB ]
    HPRD00362
    Protein Interaction databases
    DIPP02452
    IntActP02452
    Polymorphism : SNP, mutations, diseases
    OMIM114000;120150;130000;130060;166200;166210;166220;166710;259420    [ map ]   
    GENECLINICS114000;120150;130000;130060;166200;166210;166220;166710;259420
    SNPCOL1A1 [dbSNP-NCBI]  
    SNPNM_000088 [SNP-NCI]  
    SNPCOL1A1 [GeneSNPs - Utah]  COL1A1] [HGBASE - SRS]
    HAPMAPCOL1A1 [HAPMAP]  
    COSMICCOL1A1 [Somatic mutation (COSMIC-CGP-Sanger)]  
    HGMDCOL1A1
    General knowledge
    Family BrowserCOL1A1 [UCSC Family Browser]
    SOURCENM_000088
    SMDHs.172928
    SAGEHs.172928
    GOossification [Amigo]  ossification
    GOextracellular matrix structural constituent [Amigo]  extracellular matrix structural constituent
    GOprotein binding [Amigo]  protein binding
    GOextracellular region [Amigo]  extracellular region
    GOcollagen [Amigo]  collagen
    GOcollagen type I [Amigo]  collagen type I
    GOcytoplasm [Amigo]  cytoplasm
    GOphosphate transport [Amigo]  phosphate transport
    GOresponse to nutrient [Amigo]  response to nutrient
    GOsensory perception of sound [Amigo]  sensory perception of sound
    GOstructural constituent of bone [Amigo]  structural constituent of bone
    GOepidermis development [Amigo]  epidermis development
    GOresponse to mechanical stimulus [Amigo]  response to mechanical stimulus
    GOresponse to inorganic substance [Amigo]  response to inorganic substance
    GOresponse to corticosteroid stimulus [Amigo]  response to corticosteroid stimulus
    GOresponse to hydrogen peroxide [Amigo]  response to hydrogen peroxide
    GOresponse to peptide hormone stimulus [Amigo]  response to peptide hormone stimulus
    GOresponse to cAMP [Amigo]  response to cAMP
    KEGGCell Communication
    KEGGFocal adhesion
    KEGGECM-receptor interaction
    PubGeneCOL1A1
    TreeFamCOL1A1
    CTD1277 [Comparative ToxicoGenomics Database]
    Other databases
    Probes
    ProbeCancer Cytogenetics (Bari)
    ProbeCOL1A1 Related clones (RZPD - Berlin)
    PubMed
    PubMed219 Pubmed reference(s) in LocusLink

    Bibliography

    Brittle bones--fragile molecules: disorders of collagen gene structure and expression.
    Byers PH
    Trends in genetics : TIG. 1990 ; 6 (9) : 293-300.
    PMID 2238087
     
    Ring 22 chromosomes in dermatofibrosarcoma protuberans are low-level amplifiers of chromosome 17 and 22 sequences.
    Pedeutour F, Simon MP, Minoletti F, Sozzi G, Pierotti MA, Hecht F, Turc-Carel C
    Cancer research. 1995 ; 55 (11) : 2400-2403.
    PMID 7757993
     
    Soft tissue sarcomas in dermatology.
    Fish FS
    Dermatologic surgery : official publication for American Society for Dermatologic Surgery [et al.]. 1996 ; 22 (3) : 268-273.
    PMID 8599739
     
    Translocation, t(17;22)(q22;q13), in dermatofibrosarcoma protuberans: a new tumor-associated chromosome rearrangement.
    Pedeutour F, Simon MP, Minoletti F, Barcelo G, Terrier-Lacombe MJ, Combemale P, Sozzi G, Ayraud N, Turc-Carel C
    Cytogenetics and cell genetics. 1996 ; 72 (2-3) : 171-174.
    PMID 8978765
     
    The human type I collagen mutation database.
    Dalgleish R
    Nucleic acids research. 1997 ; 25 (1) : 181-187.
    PMID 9016532
     
    Deregulation of the platelet-derived growth factor B-chain gene via fusion with collagen gene COL1A1 in dermatofibrosarcoma protuberans and giant-cell fibroblastoma.
    Simon MP, Pedeutour F, Sirvent N, Grosgeorge J, Minoletti F, Coindre JM, Terrier-Lacombe MJ, Mandahl N, Craver RD, Blin N, Sozzi G, Turc-Carel C, O'Brien KP, Kedra D, Fransson I, Guilbaud C, Dumanski JP
    Nature genetics. 1997 ; 15 (1) : 95-98.
    PMID 8988177
     
    Transforming activity of the chimeric sequence formed by the fusion of collagen gene COL1A1 and the platelet derived growth factor b-chain gene in dermatofibrosarcoma protuberans.
    Greco A, Fusetti L, Villa R, Sozzi G, Minoletti F, Mauri P, Pierotti MA
    Oncogene. 1998 ; 17 (10) : 1313-1319.
    PMID 9771975
     
    Fibrosarcomatous (high-grade) dermatofibrosarcoma protuberans: clinicopathologic and immunohistochemical study of a series of 41 cases with emphasis on prognostic significance.
    Mentzel T, Beham A, Katenkamp D, Dei Tos AP, Fletcher CD
    The American journal of surgical pathology. 1998 ; 22 (5) : 576-587.
    PMID 9591728
     
    COL1A1-PDGFB fusion in a ring chromosome 4 found in a dermatofibrosarcoma protuberans.
    Navarro M, Simon MP, Migeon C, Turc-Carel C, Pedeutour F
    Genes, chromosomes & cancer. 1998 ; 23 (3) : 263-266.
    PMID 9790508
     
    Various regions within the alpha-helical domain of the COL1A1 gene are fused to the second exon of the PDGFB gene in dermatofibrosarcomas and giant-cell fibroblastomas.
    O'Brien KP, Seroussi E, Dal Cin P, Sciot R, Mandahl N, Fletcher JA, Turc-Carel C, Dumanski JP
    Genes, chromosomes & cancer. 1998 ; 23 (2) : 187-193.
    PMID 9739023
     
    The dermatofibrosarcoma protuberans-associated collagen type Ialpha1/platelet-derived growth factor (PDGF) B-chain fusion gene generates a transforming protein that is processed to functional PDGF-BB.
    Shimizu A, O'Brien KP, Sjblom T, Pietras K, Buchdunger E, Collins VP, Heldin CH, Dumanski JP, Ostman A
    Cancer research. 1999 ; 59 (15) : 3719-3723.
    PMID 10446987
     
    Detection of COL1A1-PDGFB fusion transcripts in dermatofibrosarcoma protuberans by reverse transcription-polymerase chain reaction using archival formalin-fixed, paraffin-embedded tissues.
    Wang J, Hisaoka M, Shimajiri S, Morimitsu Y, Hashimoto H
    Diagnostic molecular pathology : the American journal of surgical pathology, part B. 1999 ; 8 (3) : 113-119.
    PMID 10565681
     
    Supernumerary ring chromosome in a Bednar tumor (pigmented dermatofibrosarcoma protuberans) is composed of interspersed sequences from chromosomes 17 and 22: a fluorescence in situ hybridization and comparative genomic hybridization analysis.
    Nishio J, Iwasaki H, Ishiguro M, Ohjimi Y, Yo S, Isayama T, Naito M, Kikuchi M
    Genes, chromosomes & cancer. 2001 ; 30 (3) : 305-309.
    PMID 11170290
     
    Structural and functional analysis of a chimeric protein COL1A1-PDGFB generated by the translocation t(17;22)(q22;q13.1) in Dermatofibrosarcoma protuberans (DP).
    Simon MP, Navarro M, Roux D, Pouyssgur J
    Oncogene. 2001 ; 20 (23) : 2965-2975.
    PMID 11420709
     
    REVIEW articlesautomatic search in PubMed
    Last year publicationsautomatic search in PubMed

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    Contributor(s)

    Written02-2001Marie-Pierre Simon, Georges Maire, Florence Pedeutour
    Laboratoire de Genetique, Hopital de l'Archet, 151 route de Saint Antoine de Ginestiere BP 3079, 06202 Nice Cedex 3, France

    Citation

    This paper should be referenced as such :
    Simon MP, Maire G, Pedeutour F . COL1A1 (collagen, type I, alpha 1). Atlas Genet Cytogenet Oncol Haematol. February 2001 .
    URL : http://AtlasGeneticsOncology.org/Genes/COL1A1ID186.html

    © Atlas of Genetics and Cytogenetics in Oncology and Haematology
    indexed on : Wed Jul 2 08:22:49 2008


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