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CSTB (cystatin B (stefin B))

Identity

Other namesCPI-B
CST6
Cystatin-B
EPM1
PME
STFB
Stefin-B
HGNC CSTB
Location 21q22.3
Location_base_pair Starts at 44018259 and ends at 44020687 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description The stefin B gene is located on human chromosome 21q22.3 and it contains 3 exons and 2 introns. The transcript length of stefin B mRNA is 294 bps. A novel variant, with retention of the entire intron 2 is transcribed from two exons with an ORF of 249 bp. It encodes a putative 9.0-kDa protein of 83 amino acids, including 57 identical to stefin B followed by 26 amino acids encoded by the intron 2 sequences.

Protein

 
  Richardson diagram of stefin B structure: alpha-helixes are shown in red and beta-sheets in green (MEROPS: the peptidase database - I25.003: cystatin B).
Description The cystatin superfamily comprises at least four families of closely related proteins, such as stefins (family I), cystatins (family II), kininogens (family III), and various structurally related but noninhibitory proteins of family IV. A significant structural difference between stefins and cystatins is the signal peptide, which is responsible for extracellular targeting of cystatins, whereas stefins lack this peptide and have been reported as intracellular inhibitors. Human stefin B is a single chain protein consisting of 98 amino acid residues, with a molecular mass of 11,175 kDa. Stefin B is a neutral protein with pI values between 5.9 - 6.5 and is able to form a dimmer stabilized by noncovalent forces. Like other members of the cystatin superfamily, stefin B is reversible and competitive inhibitor of cysteine proteases, particularly cathepsin L and cathepsin S with Ki values in the picomolar range whereas cathepsin B inhibition is weaker (Ki 10-7M).
Expression Stefin B is widely distributed among different cell types and tissues. Although it lacks an export signal sequence and is generally thought to function intracellularly, it has also been found in extracellular fluid.
Function Stefin B is thought to play a role in protecting cytosolic and cytoskeleton proteins against the cysteine proteases accidentally released from lysosomes. Besides protease inactivation stefin B could bind other proteins in a multiprotein complex which might contribute to the disease in patients with progressive myoclonus epilepsy. Decreased levels of stefin B mRNA were detected in patients with progressive myoclonus epilepsy and associated with excessive activity of cathepsin B. Moreover, stefin B may be important in the control of osteoclasts bone resorption. It inhibits bone resorption by down-regulating intracellular cathepsin K activity. On the other hand stefin B protected osteoclasts from experimentally induced apoptosis, promoting cell survival in the nervous system.
Homology Human stefin B exhibit a high degree of homology to other cysteine protease inhibitors of the cystatin superfamily which includes human stefin A and the homologues in other species. It is 79% identical with cystatin beta from rat liver, but contains only a single cysteine.

Mutations

Note Eight mutations in the stefin B gene have been reported to associate with an autosomal recessive neurodegenerative disorder, progressive myoclonus epilepsy of Unverricht-Lundborg type (EPM1). Most of the disease alleles harbour an unstable expansion of at least 30 copies of a normally polymorphic 12-nucleotide, dodecamer repeat located in the promoter region of the stefin B gene. Three reported EPM1 mutations affect splice sites, two result in amino-acid changes and two predict truncated proteins either through creating a stop codon or producing a frameshift.

Implicated in

Entity Invasive cancers
Disease Higher levels of stefin B in tumours have been determined in lung, breast, head and neck and prostate cancer as well as in murine lymphosarcomas, hepatomas and Lewis lung carcinomas. These higher levels, up to a certain level, may counter-balance the excessive activity of cysteine cathepsins, associated with matrix remodelling resulting in the progression of the disease. On the other hand, high cytosolic levels of stefins may be relevant for regulation of apoptosis, when initiated via lysosomal cell death pathway inhibiting cathepsin B, which was proposed as a dominant execution protease in the lysosomal apoptotic pathways, induced in a variety of tumour cells by tumour necrosis factor alpha ( TNF-alpha ). In some studies lower levels of stefins in tumours have been reported. Lower mRNA levels of stefin B have been reported in breast and esophagus tumours as compared to adjacent control tissues.
Although stefins are cytosolic proteins, they have also been detected in body fluids of cancer patients. Stefin B has been detected in ascitic fluid from patients with ovarian carcinoma and in bronhoalveolar fluid of lung cancer patients.
Diagnosis: The poor survival rate of hepatocellular carcinoma is in part due to the inability to diagnose patients at an early stage. Stefin B is specifically overexpressed in most hepatocellular carcinoma and is also elevated in the serum of a large proportion of hepatocellular carcinoma patients. Stefin B may be a useful marker for diagnosing patients with hepatocellular carcinoma with a high sensitivity.
Prognosis Higher levels of stefin B in tumour tissues have been shown to correlate with a favourable prognosis of cancer patients. A significant prognostic value of stefin B was determined in patients with lung and head and neck cancer. On the other hand, animal model with excluded expression of stefin B did not support its suppressive function in cancer. A significantly lower metastatic spread was detected in stefin B knock-out mice than in wild-type animals. Similarly, higher levels of stefin B in body fluids have been associated with a poor prognosis of cancer patients. Alterations in secretion may result in higher extracellular and lower intracellular levels of stefins and, therefore, a reverse correlation with patient' survival is to be expected.
Oncogenesis Increased levels of cysteine protease activity, not being balanced by a corresponding increase of cysteine protease inhibitors are associated with progression of malignant disease and poor patient's prognosis. Enhanced expression of stefin B would be expected to diminish the tumour-associated proteolytic activity and indeed, there is evidence of a suppressive role of stefin B in various cancer types.
  
Entity Progressive myoclonus epilepsy
Disease The progressive myoclonus epilepsy of the Unverricht-Lundborg type (EPM1) is an autosomal recessive disease characterized by progressive myoclonic jerks and decline in cognition. Genetic linkage studies, suggest the involvement of the stefin B gene. A decreased amount of stefin B mRNA is a common finding in EPM1 patients and it may be due to: 1) a mutation in the promoter region causing a decrease in the rate of transcription of the gene or 2) mutations of the coding region/splice sites that may inhibit translation or diminish the half-life of the transcript and/or of the protein. The availability of a stefin B knock-out mouse as a model for the disease has allowed identification of the presence of severe apoptotic damage to the cerebellar granule cells. This observation combined with the anti-protease function of stefin B protein has suggested that it may have an anti-apoptotic function in the cerebellum. It was shown that a number of proteins (manly proteins that are involved in the regulation of cytoskeletal functions) that are not proteases can interact specifically with stefin B, forming a multiprotein complex. The first hypothesis is that stefin B may be active as antiprotease, protecting the complex against the attack of proteases. An alternative hypothesis is that stefin B may bind to the interacting proteins modifying the structure, thus allowing the correct formation of the complex. A further hypothesis is the sequestration of stefin B by the multiprotein complex, thus impeding its interaction with cathepsins.
  

External links

Nomenclature
HGNCCSTB   2482
Entrez_GeneCSTB  1476  cystatin B (stefin B)
Cards
AtlasCSTBID40181ch21q22
GeneCardsCSTB
EnsemblENSG00000160213 [Gene_View]  CSTB [Vega]
GenatlasCSTB
Genomic and cartography
GoldenPathCSTB  -  21q22.3   chr21:44018259-44020687 -  21q22.3   [Description]    (hg18-Mar_2006)
EnsemblCSTB - 21q22.3 [CytoView]
NCBIMapview
OMIM254800 Disease map [OMIM]
OMIM601145 Disease map [OMIM]
HomoloGeneCSTB
Gene and transcription
GenbankAK312133 [ ENTREZ ]
GenbankBC003370 [ ENTREZ ]
GenbankBC010532 [ ENTREZ ]
GenbankBT007040 [ ENTREZ ]
GenbankCR542148 [ ENTREZ ]
RefSeqNM_000100 [ SRS ]    NM_000100 [ ENTREZ ]
RefSeqAC_000064 [ SRS ]    AC_000064 [ ENTREZ ]
RefSeqAC_000153 [ SRS ]    AC_000153 [ ENTREZ ]
RefSeqNC_000021 [ SRS ]    NC_000021 [ ENTREZ ]
RefSeqNT_011515 [ SRS ]    NT_011515 [ ENTREZ ]
RefSeqNW_001838716 [ SRS ]    NW_001838716 [ ENTREZ ]
RefSeqNW_927384 [ SRS ]    NW_927384 [ ENTREZ ]
CCDSCSTB CCDS - NCBI
AceViewCSTB AceView - NCBI
UnigeneHs.695 [ SRS ]    Hs.695 [ NCBI ]
Fast-db3809 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP04080 [ SRS]    P04080 [ EXPASY ]     P04080 [ INTERPRO ]     P04080 [ UNIPROT ] P04080 [ VarSplice FASTA ]
PrositePS00287 CYSTATIN [ SRS ]    PS00287 CYSTATIN [ Expasy ]
InterproIPR000010 Prot_inh_cystat [ SRS ]    IPR000010 Prot_inh_cystat [ EBI ]
InterproIPR001713 Prot_inh_stefinA [ SRS ]    IPR001713 Prot_inh_stefinA [ EBI ]
CluSTrP04080
PfamPF00031 Cystatin [ SRS ]    PF00031 Cystatin [ Sanger ]    pfam00031 [ NCBI-CDD ]
SmartSM00043 CY [EMBL]
BlocksP04080
PDB1STF [ SRS ]    1STF [ PdbSum ],   1STF [ IMB ]   1STF [ RSDB ]
PDB2OCT [ SRS ]    2OCT [ PdbSum ],   2OCT [ IMB ]   2OCT [ RSDB ]
HPRD03091
Protein Interaction databases
DIPP04080
IntActP04080
Polymorphism : SNP, mutations, diseases
OMIM254800    [ map ]   
OMIM601145    [ map ]   
GENETests254800
GENETests601145
SNPCSTB [dbSNP-NCBI]  
SNPNM_000100 [SNP-NCI]  
SNPCSTB [GeneSNPs - Utah]  CSTB] [HGBASE - SRS]
HAPMAPCSTB [HAPMAP]  
HGMDCSTB
Genetic AssociationCSTB
CDC HuGECSTB
General knowledge
Family BrowserCSTB [UCSC Family Browser]
SOURCENM_000100
SMDHs.695
SAGEHs.695
GOcysteine protease inhibitor activity [Amigo]  cysteine protease inhibitor activity
GOprotein binding [Amigo]  protein binding
GOintracellular [Amigo]  intracellular
GOnucleus [Amigo]  nucleus
GOcytoplasm [Amigo]  cytoplasm
GOadult locomotory behavior [Amigo]  adult locomotory behavior
PubGeneCSTB
TreeFamCSTB
CTD1476 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCSTB Related clones (RZPD - Berlin)
PubMed
PubMed44 Pubmed reference(s) in Entrez

Bibliography

Amino acid sequence of the intracellular cysteine proteinase inhibitor cystatin B from human liver.
Ritonja A, Machleidt W, Barrett AJ.
Biochem Biophys Res Commun. 1985 Sep 30;131(3):1187-92.
PMID 3902020
 
Isolation and characterization of the mouse cystatin B gene.
Pennacchio LA, Myers RM.
Genome Res. 1996 Nov;6(11):1103-9.
PMID 8938434
 
Friends and relations of the cystatin superfamily--new members and their evolution.
Brown WM, Dziegielewska KM.
Protein Sci. 1997 Jan;6(1):5-12.
PMID 9007972
 
Cysteine proteinases and their endogenous inhibitors: target proteins for prognosis, diagnosis and therapy in cancer (review).
Kos J, Lah TT.
Oncol Rep. 1998 Nov-Dec;5(6):1349-61.
PMID 9769367
 
Cysteine proteinase inhibitors stefin A, stefin B, and cystatin C in sera from patients with colorectal cancer: relation to prognosis.
Kos J, Krasovec M, Cimerman N, Nielsen HJ, Christensen IJ, Brunner N.
Clin Cancer Res. 2000 Feb;6(2):505-11.
PMID 10690531
 
Cysteine cathepsins (proteases)--on the main stage of cancer?
Turk V, Kos J, Turk B.
Cancer Cell. 2004 May;5(5):409-10.
PMID 15144947
 
Towards novel anti-cancer strategies based on cystatin function.
Keppler D.
Cancer Lett. 2006 Apr 28;235(2):159-76.
PMID 15893421
 
Cystatin B: mutation detection, alternative splicing and expression in progressive myclonus epilepsy of Unverricht-Lundborg type (EPM1) patients.
Joensuu T, Kuronen M, Alakurtti K, Tegelberg S, Hakala P, Aalto A, Huopaniemi L, Aula N, Michellucci R, Eriksson K, Lehesjoki AE.
Eur J Hum Genet. 2007 Feb;15(2):185-93. Epub 2006 Sep 27.
PMID 17003839
 
Cystatin B and its EPM1 mutants are polymeric and aggregate prone in vivo.
Cipollini E, Riccio M, Di Giaimo R, Dal Piaz F, Pulice G, Catania S, Caldarelli I, Dembic M, Santi S, Melli M.
Biochim Biophys Acta. 2008 Feb;1783(2):312-22. Epub 2007 Sep 4.
PMID 17920138
 
Identification of cystatin B as a potential serum marker in hepatocellular carcinoma.
Lee MJ, Yu GR, Park SH, Cho BH, Ahn JS, Park HJ, Song EY, Kim DG.
Clin Cancer Res. 2008 Feb 15;14(4):1080-9.
PMID 18281540
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written07-2008Zala Jevnikar, Janko Kos
Faculty of Pharmacy, University of Ljubljana, Ljubljana, Slovenia

Citation

This paper should be referenced as such :
Jevnikar Z, Kos J . CSTB (cystatin B (stefin B)). Atlas Genet Cytogenet Oncol Haematol. July 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/CSTBID40181ch21q22.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:21:38 2008


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