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CTNNB1 (Catenin, beta-1)

Identity

Other namesCadherin-associated protein, beta
HGNC CTNNB1
Location 3p22-p21.3
Location_base_pair Starts at 41215946 and ends at 41256943 bp from pter ( according to hg18-Mar_2006).
 
  CTNNB1 (3p22) - Courtesy Mariano Rocchi, Resources for Molecular Cytogenetics. Laboratories willing to validate the probes are welcome : contact rocchi@biologia.uniba.it

DNA/RNA

 
Description The gene encompasses 23.2kb of DNA ; 16 exons (the first is non-coding).
Transcription 3362 nucleotides mRNA ; 2343 bp open reading frame. Alternative splicing within exon 16 produces a splice variant that is 159 bp shorter in the 3' untranslated region.

Protein

 
Description 781 amino acids ; 92 kDa protein. Can be phosphorylated ; contains from N-term to C-term, a phosphorylation site by the serine-threonine glycogen synthase kinase -3b(GSK-3b), an a-catenin binding site, 13 armadillo repeats and a transactivating domain.
Expression Widely expressed.
Localisation Cytoplasm and nucleus
Function Important functions in the E-cadherin-mediated cell-cell adhesion system and also as a dowstream signaling molecule in the Wnt pathway. Cytoplasmic accumulation of b catenin allows it to translocate to the nucleus to form complexes with transcription factors of the T cell factor-lymphoid enhancer factor (Tcf-Lef) family. b-catenin is assumed to transactivate mostly unknown target genes, which may stimulate cell proliferation (acts as an oncogene) or inhibit apoptosis. The b-catenin level in the cell is regulated by its association with the adenomatous polyposis coli ( APC) tumor suppressor protein, axin and GSK-3b. Phosphorylation of b-catenin by the APC-axin-GSK-3b complex leads to its degradation by the ubiquitin-proteasome system.
Homology The b-catenin protein shares 70 % amino acid identity with both plakoglobin (intracellular junction in desmosomes) and the product of the Drosphila segment polarity gene "armadillo".

Mutations

Somatic Two mechanisms underlying the increase in b-catenin levels by stabilizing b-catenin are known. One is inactivating mutation in the APC gene, the other is activating mutation at the GSK-3b phosphorylation sites within exon 3 of the b-catenin gene.
b-catenin plays a key role in the development of colorectal cancer and has been found mutated in colorectal cancer cell lines. b-catenin aberration is a frequent event in the development of hepatocellular carcinoma and may facilitate its development in the course of chronic hepatitis. b-catenin has also been found mutated in hepatoblastoma, ovarian carcinoma, medulloblastoma, pilomatricoma as well as in melanoma cell lines.

External links

Nomenclature
HGNCCTNNB1   2514
Entrez_GeneCTNNB1  1499  catenin (cadherin-associated protein), beta 1, 88kDa
Cards
AtlasCTNNB1ID71
GeneCardsCTNNB1
EnsemblENSG00000168036 [Gene_View]  CTNNB1 [Vega]
GenatlasCTNNB1
Genomic and cartography
GoldenPathCTNNB1  -     chr3:41215946-41256943 +  3p21   [Description]    (hg18-Mar_2006)
EnsemblCTNNB1 - 3p21 [CytoView]
NCBIMapview
OMIM114550 Disease map [OMIM]
OMIM116806 Disease map [OMIM]
OMIM132600 Disease map [OMIM]
OMIM155255 Disease map [OMIM]
HomoloGeneCTNNB1
Gene and transcription
GenbankAB062292 [ ENTREZ ]
GenbankAK095242 [ ENTREZ ]
GenbankAK289932 [ ENTREZ ]
GenbankAK314776 [ ENTREZ ]
GenbankBC058926 [ ENTREZ ]
RefSeqNM_001098209 [ SRS ]    NM_001098209 [ ENTREZ ]
RefSeqNM_001098210 [ SRS ]    NM_001098210 [ ENTREZ ]
RefSeqNM_001904 [ SRS ]    NM_001904 [ ENTREZ ]
RefSeqAC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeqAC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeqNC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeqNT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeqNW_001838877 [ SRS ]    NW_001838877 [ ENTREZ ]
RefSeqNW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
CCDSCTNNB1 CCDS - NCBI
AceViewCTNNB1 AceView - NCBI
UnigeneHs.476018 [ SRS ]    Hs.476018 [ NCBI ]
Fast-db4557 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP35222 [ SRS]    P35222 [ EXPASY ]     P35222 [ INTERPRO ]     P35222 [ UNIPROT ] P35222 [ VarSplice FASTA ]
PrositePS50176 ARM_REPEAT [ SRS ]    PS50176 ARM_REPEAT [ Expasy ]
InterproIPR011989 ARM-like [ SRS ]    IPR011989 ARM-like [ EBI ]
InterproIPR000225 Armadillo [ SRS ]    IPR000225 Armadillo [ EBI ]
InterproIPR013284 Beta-catenin [ SRS ]    IPR013284 Beta-catenin [ EBI ]
InterproIPR000357 HEAT [ SRS ]    IPR000357 HEAT [ EBI ]
CluSTrP35222
PfamPF00514 Arm [ SRS ]    PF00514 Arm [ Sanger ]    pfam00514 [ NCBI-CDD ]
PfamPF02985 HEAT [ SRS ]    PF02985 HEAT [ Sanger ]    pfam02985 [ NCBI-CDD ]
SmartSM00185 ARM [EMBL]
BlocksP35222
PDB1G3J [ SRS ]    1G3J [ PdbSum ],   1G3J [ IMB ]   1G3J [ RSDB ]
PDB1JDH [ SRS ]    1JDH [ PdbSum ],   1JDH [ IMB ]   1JDH [ RSDB ]
PDB1JPW [ SRS ]    1JPW [ PdbSum ],   1JPW [ IMB ]   1JPW [ RSDB ]
PDB1LUJ [ SRS ]    1LUJ [ PdbSum ],   1LUJ [ IMB ]   1LUJ [ RSDB ]
PDB1P22 [ SRS ]    1P22 [ PdbSum ],   1P22 [ IMB ]   1P22 [ RSDB ]
PDB1QZ7 [ SRS ]    1QZ7 [ PdbSum ],   1QZ7 [ IMB ]   1QZ7 [ RSDB ]
PDB1T08 [ SRS ]    1T08 [ PdbSum ],   1T08 [ IMB ]   1T08 [ RSDB ]
PDB1TH1 [ SRS ]    1TH1 [ PdbSum ],   1TH1 [ IMB ]   1TH1 [ RSDB ]
PDB2G57 [ SRS ]    2G57 [ PdbSum ],   2G57 [ IMB ]   2G57 [ RSDB ]
PDB2GL7 [ SRS ]    2GL7 [ PdbSum ],   2GL7 [ IMB ]   2GL7 [ RSDB ]
PDB2Z6H [ SRS ]    2Z6H [ PdbSum ],   2Z6H [ IMB ]   2Z6H [ RSDB ]
HPRD00286
Protein Interaction databases
DIPP35222
IntActP35222
Polymorphism : SNP, mutations, diseases
OMIM114550    [ map ]   
OMIM116806    [ map ]   
OMIM132600    [ map ]   
OMIM155255    [ map ]   
GENETests114550
GENETests116806
GENETests132600
GENETests155255
SNPCTNNB1 [dbSNP-NCBI]  
SNPNM_001098209 [SNP-NCI]  
SNPNM_001098210 [SNP-NCI]  
SNPNM_001904 [SNP-NCI]  
SNPCTNNB1 [GeneSNPs - Utah]  CTNNB1] [HGBASE - SRS]
HAPMAPCTNNB1 [HAPMAP]  
COSMICCTNNB1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDCTNNB1
Genetic AssociationCTNNB1
CDC HuGECTNNB1
General knowledge
Family BrowserCTNNB1 [UCSC Family Browser]
SOURCENM_001098209
SOURCENM_001098210
SOURCENM_001904
SMDHs.476018
SAGEHs.476018
GOnegative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GOcellular morphogenesis during differentiation [Amigo]  cellular morphogenesis during differentiation
GOskeletal development [Amigo]  skeletal development
GOpatterning of blood vessels [Amigo]  patterning of blood vessels
GOendoderm formation [Amigo]  endoderm formation
GOcell fate specification [Amigo]  cell fate specification
GOcell fate determination [Amigo]  cell fate determination
GOendodermal cell fate commitment [Amigo]  endodermal cell fate commitment
GOepithelial to mesenchymal transition [Amigo]  epithelial to mesenchymal transition
GOchromatin binding [Amigo]  chromatin binding
GOdouble-stranded DNA binding [Amigo]  double-stranded DNA binding
GOtranscription factor activity [Amigo]  transcription factor activity
GOtranscription coactivator activity [Amigo]  transcription coactivator activity
GOsignal transducer activity [Amigo]  signal transducer activity
GOstructural molecule activity [Amigo]  structural molecule activity
GOmembrane fraction [Amigo]  membrane fraction
GOnucleus [Amigo]  nucleus
GOtranscription factor complex [Amigo]  transcription factor complex
GOcytoplasm [Amigo]  cytoplasm
GOcytosol [Amigo]  cytosol
GOcytoskeleton [Amigo]  cytoskeleton
GOplasma membrane [Amigo]  plasma membrane
GOfascia adherens [Amigo]  fascia adherens
GOtranscription [Amigo]  transcription
GOsynaptic transmission [Amigo]  synaptic transmission
GOectoderm development [Amigo]  ectoderm development
GOheart development [Amigo]  heart development
GOprotein C-terminus binding [Amigo]  protein C-terminus binding
GOtranscription factor binding [Amigo]  transcription factor binding
GOdorsal/ventral axis specification [Amigo]  dorsal/ventral axis specification
GOproximal/distal pattern formation [Amigo]  proximal/distal pattern formation
GObasolateral plasma membrane [Amigo]  basolateral plasma membrane
GOlateral plasma membrane [Amigo]  lateral plasma membrane
GOmorphogenesis of embryonic epithelium [Amigo]  morphogenesis of embryonic epithelium
GOcell-cell adhesion [Amigo]  cell-cell adhesion
GOZ disc [Amigo]  Z disc
GOlamellipodium [Amigo]  lamellipodium
GOhemopoiesis [Amigo]  hemopoiesis
GOlung development [Amigo]  lung development
GOandrogen receptor signaling pathway [Amigo]  androgen receptor signaling pathway
GOpositive regulation of epithelial cell differentiation [Amigo]  positive regulation of epithelial cell differentiation
GObeta-catenin destruction complex [Amigo]  beta-catenin destruction complex
GOforebrain development [Amigo]  forebrain development
GOpancreas development [Amigo]  pancreas development
GOmicrovillus membrane [Amigo]  microvillus membrane
GOnegative regulation of chondrocyte differentiation [Amigo]  negative regulation of chondrocyte differentiation
GOembryonic hindlimb morphogenesis [Amigo]  embryonic hindlimb morphogenesis
GOembryonic arm morphogenesis [Amigo]  embryonic arm morphogenesis
GOregulation of cell proliferation [Amigo]  regulation of cell proliferation
GOodontogenesis of dentine-containing tooth [Amigo]  odontogenesis of dentine-containing tooth
GOembryonic digit morphogenesis [Amigo]  embryonic digit morphogenesis
GOapical junction complex [Amigo]  apical junction complex
GOapical part of cell [Amigo]  apical part of cell
GOalpha-catenin binding [Amigo]  alpha-catenin binding
GOcadherin binding [Amigo]  cadherin binding
GObone resorption [Amigo]  bone resorption
GOpositive regulation of osteoblast differentiation [Amigo]  positive regulation of osteoblast differentiation
GOnegative regulation of osteoclast differentiation [Amigo]  negative regulation of osteoclast differentiation
GOpositive regulation of transcription from RNA polymerase II promoter [Amigo]  positive regulation of transcription from RNA polymerase II promoter
GOcell maturation [Amigo]  cell maturation
GOsynaptic vesicle transport [Amigo]  synaptic vesicle transport
GOcamera-type eye morphogenesis [Amigo]  camera-type eye morphogenesis
GOandrogen receptor binding [Amigo]  androgen receptor binding
GOsynapse organization and biogenesis [Amigo]  synapse organization and biogenesis
GOWnt receptor signaling pathway through beta-catenin [Amigo]  Wnt receptor signaling pathway through beta-catenin
BIOCARTAALK in cardiac myocytes    [Genes]
BIOCARTACell to Cell Adhesion Signaling    [Genes]
BIOCARTAInactivation of Gsk3 by AKT causes accumulation of b-catenin in Alveolar Macrophages    [Genes]
BIOCARTAMulti-step Regulation of Transcription by Pitx2    [Genes]
BIOCARTAPresenilin action in Notch and Wnt signaling    [Genes]
BIOCARTATrefoil Factors Initiate Mucosal Healing    [Genes]
BIOCARTAWNT Signaling Pathway    [Genes]
KEGGWnt signaling pathway
KEGGFocal adhesion
KEGGAdherens junction
KEGGTight junction
KEGGLeukocyte transendothelial migration
KEGGColorectal cancer
PubGeneCTNNB1
TreeFamCTNNB1
CTD1499 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeCancer Cytogenetics (Bari)
ProbeCTNNB1 Related clones (RZPD - Berlin)
PubMed
PubMed499 Pubmed reference(s) in Entrez

Bibliography

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Science (New York, N.Y.). 1993 ; 262 (5140) : 1734-1737.
PMID 8259519
 
Localization of the human beta-catenin gene (CTNNB1) to 3p21: a region implicated in tumor development.
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Yeast artificial chromosome cloning of the beta-catenin locus on human chromosome 3p21-22.
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Signal transduction of beta-catenin.
Gumbiner BM
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The gene for the APC-binding protein beta-catenin (CTNNB1) maps to chromosome 3p22, a region frequently altered in human malignancies.
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Assignment of the human beta-catenin gene (CTNNB1) to 3p22-->p21.3 by fluorescence in situ hybridization.
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PMID 7736793
 
Functional interaction of beta-catenin with the transcription factor LEF-1.
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PMID 8757136
 
Nuclear localization of beta-catenin by interaction with transcription factor LEF-1.
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PMID 8892228
 
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Binding of GSK3beta to the APC-beta-catenin complex and regulation of complex assembly.
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beta-catenin is a target for the ubiquitin-proteasome pathway.
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Activation of beta-catenin-Tcf signaling in colon cancer by mutations in beta-catenin or APC.
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PMID 9065402
 
Loss of beta-catenin regulation by the APC tumor suppressor protein correlates with loss of structure due to common somatic mutations of the gene.
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PMID 9377578
 
Stabilization of beta-catenin by genetic defects in melanoma cell lines.
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PMID 9065403
 
Functional interaction of an axin homolog, conductin, with beta-catenin, APC, and GSK3beta.
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PMID 9554852
 
Somatic mutations of the beta-catenin gene are frequent in mouse and human hepatocellular carcinomas.
de La Coste A, Romagnolo B, Billuart P, Renard CA, Buendia MA, Soubrane O, Fabre M, Chelly J, Beldjord C, Kahn A, Perret C
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PMID 9671767
 
Nuclear localization signal-independent and importin/karyopherin-independent nuclear import of beta-catenin.
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PMID 9501980
 
Downregulation of beta-catenin by human Axin and its association with the APC tumor suppressor, beta-catenin and GSK3 beta.
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PMID 9601641
 
Axin, a negative regulator of the Wnt signaling pathway, forms a complex with GSK-3beta and beta-catenin and promotes GSK-3beta-dependent phosphorylation of beta-catenin.
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Activation of the beta-catenin gene by interstitial deletions involving exon 3 in primary colorectal carcinomas without adenomatous polyposis coli mutations.
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PMID 10398436
 
A common human skin tumour is caused by activating mutations in beta-catenin.
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PMID 10192393
 
The metalloproteinase matrilysin is a target of beta-catenin transactivation in intestinal tumors.
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PMID 10362259
 
Intestinal polyposis in mice with a dominant stable mutation of the beta-catenin gene.
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PMID 10545105
 
Childhood hepatoblastomas frequently carry a mutated degradation targeting box of the beta-catenin gene.
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PMID 9927029
 
Beta-catenin mutations in hepatocellular carcinoma correlate with a low rate of loss of heterozygosity.
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The cyclin D1 gene is a target of the beta-catenin/LEF-1 pathway.
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PMID 10318916
 
APC mutations in sporadic medulloblastomas.
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PMID 10666372
 
Gastrin is a target of the beta-catenin/TCF-4 growth-signaling pathway in a model of intestinal polyposis.
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PMID 10953028
 
Mutations in AXIN2 cause colorectal cancer with defective mismatch repair by activating beta-catenin/TCF signalling.
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Frequent beta-catenin aberration in human hepatocellular carcinoma.
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PMID 11282485
 
The transcriptional factor Tcf-4 contains different binding sites for beta-catenin and plakoglobin.
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The Journal of biological chemistry. 2002 ; 277 (3) : 1884-1891.
PMID 11711551
 
Oncogenic beta-catenin and MMP-7 (matrilysin) cosegregate in late-stage clinical colon cancer.
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Gastroenterology. 2002 ; 122 (1) : 60-71.
PMID 11781281
 
Possible association between higher beta-catenin mRNA expression and mutated beta-catenin in sporadic desmoid tumors: real-time semiquantitative assay by TaqMan polymerase chain reaction.
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Laboratory investigation; a journal of technical methods and pathology. 2002 ; 82 (1) : 97-103.
PMID 11796830
 
Frizzled-10, up-regulated in primary colorectal cancer, is a positive regulator of the WNT - beta-catenin - TCF signaling pathway.
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International journal of molecular medicine. 2002 ; 9 (2) : 107-112.
PMID 11786918
 
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Contributor(s)

Written03-2002Brigitte Debuire, Antoinette Lemoine and Raphael Saffroy
Service de Biochimie et Biologie moléculaire, Hôpital Universitaire Paul Brousse, UPRES 1596-Faculté de Médecine Paris-Sud, 14 avenue Paul Vaillant Couturier, 94804 Villejuif Cedex, France

Citation

This paper should be referenced as such :
Debuire B, Lemoine A, Saffroy R . CTNNB1 (Catenin, beta-1). Atlas Genet Cytogenet Oncol Haematol. March 2002 .
URL : http://AtlasGeneticsOncology.org/Genes/CTNNB1ID71.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:21:40 2008


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