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DENR (density-regulated protein)

Identity

Other namesDRP
DRP1
SMAP-3
HGNC DENR
Location 12q24.31
Location_base_pair Starts at 121803324 and ends at 121821906 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

Description The gene encompasses 18583 bp DNA and contains 8 exons (e.g. NCBI: NC_000012).
Transcription 2766 bp mRNA
The 3'-untranslated region (3'UTR) of DENR was found to have a high number of uracyl (U)- and adenine (A)-rich sequences (AREs) (Mazan-Mamczarz and Gartenhaus, 2007).

Protein

Description Size: 198 amino acids; 22092 Da.
Expression DENR is expressed in variety of tissues, with the highest quantity in skeletal and cardiac muscle. The protein level of DENR is up regulated in parallel with increasing cell density (Deyo et al., 1998). Very recently, it was found that this up regulation is controlled by the AUF-1 protein which binds to the 3'UTR of DENR mRNA and in a cell density-dependent manner (Mazan-Mamczarz and Gartenhaus, 2007). Furthermore, Oh JJ. et al. showed that DENR expression is increased in association with HER-2 overexpression in ovarian and breast cancers (Oh et al., 1999).
Localisation Predominantly in the cytoplasm of 3T3 cells.
Function Until recently there was little published data regarding DENR function. Reinert et al. showed that the oncogene MCT-1 interacts with DENR in vivo and in vitro. DENR contains a SUI1 domain which is also found in translation initiation factor eIF1, where the SUI1 domain is involved in recognition of the translation initiation codon (Yoon and Donahue, 1992). Interestingly, DENR together with MCT-1 sediment in the translation initiation complex fraction in both human embryonic kidney cell cultures and lymphoid cell lines. This complex was shown to interact with the cap complex and to alter the mRNA translational profile of a subset of cancer-related mRNAs. This supports a model where MCT-1 exerts it ongogenic function, at least in part by recruiting the SUI1 domain containing DENR to the translation initiation complex, thereby modulating the translational profile (Reinert et al., 2006).
Homology The SUI1 domain present in DENR is homologous to the SUI-1 domain found in eIF1. The SUI1 domain contains a secondary structure fold corresponding to that found in a number of ribosomal proteins and RNA-binding domains.

Implicated in

Entity Lymphoma oncogene
Note The MCT-1 oncogene protein modifies mRNA translational profiles through its interaction with DENR which contains an SUI1 domain involved in recognition of the translation initiation codon (Reinert et.al., 2006) (Yoon and Donahue, 1992).
  
Entity Ovarian cancer and Breast cancer
Disease DENR expression is increased in association with HER-2 overexpression in ovarian and breast cancers (Oh. et al., 1999).
  

External links

Nomenclature
HGNCDENR   2769
Entrez_GeneDENR  8562  density-regulated protein
Cards
AtlasDENRID40295ch12q24
GeneCardsDENR
EnsemblENSG00000143753 [Gene_View]  DENR [Vega]
GenatlasDENR
Genomic and cartography
GoldenPathDENR  -  12q24.31   chr12:121803324-121821906 +  12q24.31   [Description]    (hg18-Mar_2006)
EnsemblDENR - 12q24.31 [CytoView]
NCBIMapview
OMIM604550 Disease map [OMIM]
HomoloGeneDENR
Gene and transcription
GenbankAB014731 [ ENTREZ ]
GenbankAF038554 [ ENTREZ ]
GenbankAF103800 [ ENTREZ ]
GenbankAI093093 [ ENTREZ ]
GenbankBC000925 [ ENTREZ ]
RefSeqNM_003677 [ SRS ]    NM_003677 [ ENTREZ ]
RefSeqAC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeqAC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeqNC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeqNT_009755 [ SRS ]    NT_009755 [ ENTREZ ]
RefSeqNW_001838064 [ SRS ]    NW_001838064 [ ENTREZ ]
RefSeqNW_925395 [ SRS ]    NW_925395 [ ENTREZ ]
CCDSDENR CCDS - NCBI
AceViewDENR AceView - NCBI
UnigeneHs.22393 [ SRS ]    Hs.22393 [ NCBI ]
Fast-db14548 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtO43583 [ SRS]    O43583 [ EXPASY ]     O43583 [ INTERPRO ]     O43583 [ UNIPROT ] O43583 [ VarSplice FASTA ]
PrositePS50296 SUI1 [ SRS ]    PS50296 SUI1 [ Expasy ]
InterproIPR005873 Drp1 [ SRS ]    IPR005873 Drp1 [ EBI ]
InterproIPR001950 TIF_SUI1 [ SRS ]    IPR001950 TIF_SUI1 [ EBI ]
CluSTrO43583
PfamPF01253 SUI1 [ SRS ]    PF01253 SUI1 [ Sanger ]    pfam01253 [ NCBI-CDD ]
BlocksO43583
HPRD05182
Protein Interaction databases
DIPO43583
IntActO43583
Polymorphism : SNP, mutations, diseases
OMIM604550    [ map ]   
GENETests604550
SNPDENR [dbSNP-NCBI]  
SNPNM_003677 [SNP-NCI]  
SNPDENR [GeneSNPs - Utah]  DENR] [HGBASE - SRS]
HAPMAPDENR [HAPMAP]  
HGMDDENR
Genetic AssociationDENR
CDC HuGEDENR
General knowledge
Family BrowserDENR [UCSC Family Browser]
SOURCENM_003677
SMDHs.22393
SAGEHs.22393
GOmolecular_function [Amigo]  molecular_function
GOtranslation initiation factor activity [Amigo]  translation initiation factor activity
GOcellular_component [Amigo]  cellular_component
GOtranslational initiation [Amigo]  translational initiation
GObiological_process [Amigo]  biological_process
PubGeneDENR
TreeFamDENR
CTD8562 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeDENR Related clones (RZPD - Berlin)
PubMed
PubMed6 Pubmed reference(s) in Entrez

Bibliography

The suil suppressor locus in Saccharomyces cerevisiae encodes a translation factor that functions during tRNA(iMet) recognition of the start codon.
Yoon HJ, Donahue TF.
Mol Cell Biol. 1992 Jan;12(1):248-60.
PMID 1729602
 
drp, a novel protein expressed at high cell density but not during growth arrest.
Deyo JE, Chiao PJ, Tainsky MA.
DNA Cell Biol. 1998 May;17(5):437-47.
PMID 9628587
 
Identification of differentially expressed genes associated with HER-2/neu overexpression in human breast cancer cells.
Oh JJ, Grosshans DR, Wong SG, Slamon DJ.
Nucleic Acids Res. 1999 Oct 15;27(20):4008-17.
PMID 10497265
 
MCT-1 protein interacts with the cap complex and modulates messenger RNA translational profiles.
Reinert LS, Shi B, Nandi S, Mazan-Mamczarz K, Vitolo M, Bachman KE, He H, Gartenhaus RB.
Cancer Res. 2006 Sep 15;66(18):8994-9001.
PMID 16982740
 
Post-transcriptional control of the MCT-1-associated protein DENR/DRP by RNA-binding protein AUF1.
Mazan-Mamczarz K, Gartenhaus RB.
Cancer Genomics Proteomics. 2007 May-Jun;4(3):233-9.
PMID 17878526
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written06-2008Line S Reinert, Ronald B Gartenhaus
University of Maryland Greenebaum Cancer Center, 9-011 BRB, 655 West Baltimore Street, Baltimore, MD 21201, USA

Citation

This paper should be referenced as such :
Reinert LS, Gartenhaus RB . DENR (density-regulated protein). Atlas Genet Cytogenet Oncol Haematol. June 2008 .
URL : http://AtlasGeneticsOncology.org/Genes/DENRID40295ch12q24.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 27 13:21:50 2008


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