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EIF4A2 (eukaryotic translation initiation factor 4A, isoform 2)

Identity

Other namesDDX2B
HGNC (Hugo) EIF4A2
Location 3q28
Location_base_pair Starts at 187984055 and ends at 187990379 bp from pter ( according to hg18-Mar_2006)  [Mapping]

DNA/RNA

Transcription 1.9 kb mRNA; 1223 bp coding sequence

Protein

Description 407 amino acids; 4.6 kDa; NH2-term, ATP binding site, DEAD box, COOH-term
Expression wide; also expressed in the embryo
Function ADP/ATP binding; RNA helicase; binds mRNA to the ribosome: role in initiation of protein synthesis; also -binds single strand DNA
Homology DEAD box proteins, in particular other EIF4A

Implicated in

Entity t(3;18)(q27;p11.2) --> EIF4A2/ BCL6
Disease non-Hodgkin lymphoma
Prognosis yet unknown (only 1case available)
Hybrid/Mutated Gene 5' EIF4A2 - 3' BCL6; EIF4A2 fuses with the second exon of BCL6
Abnormal Protein no fusion protein, but promoter exchange
Oncogenesis BCL6 is a transcription repressor; it is supposed that substitution of the promoter of BCL6 may be responsible for BCL6 deregulation
  

External links

Nomenclature
HGNC (Hugo)EIF4A2   3284
Entrez_Gene (NCBI)EIF4A2  1974  eukaryotic translation initiation factor 4A, isoform 2
Cards
AtlasEIF4A2ID262
GeneCards (Weizmann)EIF4A2
Ensembl (Hinxton)ENSG00000156976 [Gene_View]  EIF4A2 [Vega]
AceView (NCBI)EIF4A2
Genatlas (Paris)EIF4A2
euGene (Indiana)1974
SOURCE (Stanford)NM_001967
Gene Expression (Array Express) ENSG00000156976
Genomic and cartography
GoldenPath (UCSC)EIF4A2  -  3q28   chr3:187984055-187990379 +  3q28   [Description]    (hg18-Mar_2006)
EnsemblEIF4A2 - 3q28 [CytoView]
Mapping of homologs : NCBIEIF4A2 [Mapview]
OMIM601102   
Gene and transcription
Gene : Genbank (Entrez)AB209021 AF208852 AK130087 AK225646 AK296279
Reference sequence (RefSeq transcript) :SRSNM_001967
Reference transcript : EntrezNM_001967
RefSeq genomic : SRSAC_000046 AC_000135 NC_000003 NT_005612 NW_001838884 NW_921807
RefSeq genomic : EntrezAC_000046 AC_000135 NC_000003 NT_005612 NW_001838884 NW_921807
Consensus coding sequences : CCDS NCBIEIF4A2
Cluster EST : UnigeneHs.599481 [ SRS ] Hs.599481 [ NCBI ]
Alternative Splicing : Fast-db (Paris)15432
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ14240 (SRS) Q14240 (Expasy) Q14240 (Uniprot)
With graphics : InterProQ14240
Splice isoforms : VarSplice FASTAQ14240(VarSplice FASTA)
Domaine pattern : Prosite (SRS)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domain pattern : Prosite (Expaxy)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (SRS)DEAD-like_N    DNA/RNA_helicase_C    DNA/RNA_helicase_DEAD/DEAH_N    Helicase_SF1/SF2_ATP-bd    RNA-helicase_DEAD-box_CS    RNA_helicase_DEAD_Q_motif   
Domains : Interpro (EBI)DEAD-like_N    DNA/RNA_helicase_C    DNA/RNA_helicase_DEAD/DEAH_N    Helicase_SF1/SF2_ATP-bd    RNA-helicase_DEAD-box_CS    RNA_helicase_DEAD_Q_motif   
Related proteins : CluSTrQ14240
Domain families : Pfam SRSDEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam SangerDEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam NCBIpfam00270    pfam00271   
Domain families : Smart EMBLDEXDc (SM00487)  HELICc (SM00490)  
Blocks (Seattle)Q14240
Crystal structure of protein : PDB SRS3BOR   
Crystal structure of protein : PDBSum3BOR   
Crystal structure of protein : IMB3BOR   
Crystal structure of protein : PDB RSDB3BOR   
HPRD03062
Protein Interaction databases
DIP (DOE-UCLA)Q14240
IntAct (EBI)Q14240
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIEIF4A2
SNP : GeneSNP UtahEIF4A2
SNP : HGBaseEIF4A2
Genetic variants : HAPMAPEIF4A2
Cancer Gene: CensusEIF4A2 
Somatic Mutations in Cancer : COSMICEIF4A2 
Mutations and Diseases : HGMDEIF4A2
Hereditary diseases : OMIM601102   
Hereditary diseases : GENETests601102   
Diseases : Genetic AssociationEIF4A2
General knowledge
Homologs : HomoloGeneEIF4A2
Homology/Alignments : Family Browser UCSCEIF4A2
Phylogenetic Trees/Animal Genes : TreeFamEIF4A2
Catalytic activity : Enzyme3.6.1.- [ Enzyme-Expasy ]   3.6.1.- [ Enzyme-SRS ]   3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   
Chemical/Protein Interactions : CTD1974
Keywords Ontology : AmiGOnucleotide binding  RNA binding  translation initiation factor activity  helicase activity  protein binding  ATP binding  cytosol  translation  regulation of translational initiation  ATP-dependent helicase activity  eukaryotic translation initiation factor 4F complex  hydrolase activity  interspecies interaction between organisms  
Keywords Ontology : EGO-EBInucleotide binding  RNA binding  translation initiation factor activity  helicase activity  protein binding  ATP binding  cytosol  translation  regulation of translational initiation  ATP-dependent helicase activity  eukaryotic translation initiation factor 4F complex  hydrolase activity  interspecies interaction between organisms  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesEIF4A2 Related clones (RZPD - Berlin)
Literature
PubMed18 Pubmed reference(s) in Entrez
PubGeneEIF4A2

Bibliography

Isolation and mapping of the human EIF4A2 gene homologous to the murine protein synthesis initiation factor 4A-II gene Eif4a2.
Sudo K, Takahashi E, Nakamura Y
Cytogenetics and cell genetics. 1995 ; 71 (4) : 385-388.
PMID 8521730
 
The DEAD box protein eIF4A. 2. A cycle of nucleotide and RNA-dependent conformational changes.
Lorsch JR, Herschlag D
Biochemistry. 1998 ; 37 (8) : 2194-2206.
PMID 9485365
 
Eukaryotic translation initiation factor 4AIII (eIF4AIII) is functionally distinct from eIF4AI and eIF4AII.
Li Q, Imataka H, Morino S, Rogers GW Jr, Richter-Cook NJ, Merrick WC, Sonenberg N
Molecular and cellular biology. 1999 ; 19 (11) : 7336-7346.
PMID 10523622
 
Identification of heterologous translocation partner genes fused to the BCL6 gene in diffuse large B-cell lymphomas: 5'-RACE and LA - PCR analyses of biopsy samples.
Yoshida S, Kaneita Y, Aoki Y, Seto M, Mori S, Moriyama M
Oncogene. 1999 ; 18 (56) : 7994-7999.
PMID 10637510
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written07-2000Jean-Loup Huret

Citation

This paper should be referenced as such :
Huret JL . EIF4A2 (eukaryotic translation initiation factor 4A, isoform 2). Atlas Genet Cytogenet Oncol Haematol. July 2000 .
URL : http://AtlasGeneticsOncology.org/Genes/EIF4A2ID262.html

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indexed on : Sat Feb 27 10:51:56 CET 2010

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