Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

GATA1 (GATA binding protein 1 (globin transcription factor1))

Identity

Other namesERYF1
GF1
NFE1
Hugo GATA1
Location Xp11.23

DNA/RNA

Description Genomic sequence 7,757 bases, mRNA six exons (five coding) 1497bp. Plus strand

Protein

 
  Alternative models for generation of GATA1 isoforms. The full GATA1 protein can only be translated from the full GATA1 mRNA, whereas the GATA1s protein can be translated either from the full gata-1mRNA or from the shorter splice variant in which exon 2 is skipped.
Description The full length GATA1 protein is 413 amino acids; 42.7 KDa. However two major protein isoforms are formed by alternative splicing of the mRNA and alternative translation initiation sites as shown in the figure. The shorter GATA1 protein (GATA1s) lacks the first 83 aa. ("The N-terminal activation domain AD"). GATA1s is less active in activation of megakaryocytic promoters. Both proteins contain two Zinc finger domains mediating protein interactions and DNA binding.
Expression Bone-Marrow - Erythroid, Megakaryocytic, Mast and Eosonophillic precursors.
Localisation Nuclear
Function Transcription Factor, essential for eryhtroid and megakaryocytic development
Homology A member of the family of GATA proteins.

Mutations

Germinal Implicated in germline mutations in the N- Zinc finger domain that mediates the interaction with FOG1 and/or binding to DNA, cause X-linked Dyserythropoietic anemia with thrombocytopenia. The syndrome can be also be manifested only by X-linked macrothrombocytopenia
Somatic see below

Implicated in

Entity Acquired somatic mutations in GATA1 occur in virtually all children with Down Syndrome (DS) and congenital transient myeloproliferative syndrome (TMD) or acute megakaryocytic leukemia (AMKL, M7-ANLL). The mutations have also been detected in umbilical cord blood of DS patients and in fetal liver of aborted DS embryos. The mutations occur in-utero probably during fetal liver hematopoiesis. They consist of insertions, deletions and base substitution in exon 2 and vicinity and all result in elimination of the full length GATA1 protein with preservation of the GATA1s isoform. The presence of GATA1s in the absence of full length GATA1 blocks megakaryocytic differentiation and promote proliferation of megakaryoblasts. The genes on chromosome 21 that promote this abnormality are unknown. GATA1 mutations are almost always associated with the M7 leukemia in DS although they were also described in a pair of twins with acquired trisomy 21 and in one adult non DS patient with M7. The down-regulations of genes regulated by GATA1 may explain the exquisite sensitivity of DS leukemic blasts to ACA-C.
 
Legend: Example to the distribution of the mutations in children with M7 and DS described in Rainis et al.
  

External links

Nomenclature
HugoGATA1
GDBGATA1
Entrez_GeneGATA1  2623  GATA binding protein 1 (globin transcription factor 1)
Cards
AtlasGATA1ID40689chXp11
GeneCardsGATA1
EnsemblGATA1 [Search_View]   ENSG00000102145 [Gene_View]
GenatlasGATA1
GeneLynxGATA1
eGenomeGATA1
euGene2623
Genomic and cartography
GoldenPathGATA1  -  Xp11.23   chrX:48529906-48537659 +  Xp11.23    (hg18-Mar_2006)
EnsemblGATA1 - Xp11.23 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneGATA1
Gene and transcription
GenbankAI057349 [ ENTREZ ]
GenbankBC009797 [ ENTREZ ]
GenbankM30601 [ ENTREZ ]
GenbankX17254 [ ENTREZ ]
RefSeqNM_002049 [ SRS ]    NM_002049 [ ENTREZ ]
RefSeqAC_000066 [ SRS ]    AC_000066 [ ENTREZ ]
RefSeqNC_000023 [ SRS ]    NC_000023 [ ENTREZ ]
RefSeqNT_079573 [ SRS ]    NT_079573 [ ENTREZ ]
RefSeqNW_927703 [ SRS ]    NW_927703 [ ENTREZ ]
AceViewGATA1 AceView - NCBI
UnigeneHs.765 [ SRS ]    Hs.765 [ NCBI ]     HS765 [ spliceNest ]
Fast-db7836 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP15976 [ SRS]    P15976 [ EXPASY ]     P15976 [ INTERPRO ]
PrositePS00344 GATA_ZN_FINGER_1 [ SRS ]    PS00344 GATA_ZN_FINGER_1 [ Expasy ]
PrositePS50114 GATA_ZN_FINGER_2 [ SRS ]    PS50114 GATA_ZN_FINGER_2 [ Expasy ]
InterproIPR000679 Znf_GATA [ SRS ]    IPR000679 Znf_GATA [ EBI ]
InterproIPR013088 Znf_NHR/GATA [ SRS ]    IPR013088 Znf_NHR/GATA [ EBI ]
CluSTrP15976
PfamPF00320 GATA [ SRS ]    PF00320 GATA [ Sanger ]    pfam00320 [ NCBI-CDD ]
SmartSM00401 ZnF_GATA [EMBL]
BlocksP15976
HPRD02372
Protein Interaction databases
DIPP15976
IntActP15976
Polymorphism : SNP, mutations, diseases
OMIM190685;300367;305371    [ map ]   
GENECLINICS190685;300367;305371
SNPGATA1 [dbSNP-NCBI]  
SNPNM_002049 [SNP-NCI]  
SNPGATA1 [GeneSNPs - Utah]  GATA1] [HGBASE - SRS]
HAPMAPGATA1 [HAPMAP]  
COSMICGATA1 [Somatic mutation (COSMIC-CGP-Sanger)]  
HGMDGATA1
General knowledge
Family BrowserGATA1 [UCSC Family Browser]
SOURCENM_002049
SMDHs.765
SAGEHs.765
GOtranscription factor activity [Amigo]  transcription factor activity
GOnucleus [Amigo]  nucleus
GOtranscription [Amigo]  transcription
GOregulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GOmulticellular organismal development [Amigo]  multicellular organismal development
GOzinc ion binding [Amigo]  zinc ion binding
GOsequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GOmetal ion binding [Amigo]  metal ion binding
BIOCARTAHemoglobin's Chaperone    [Genes]
PubGeneGATA1
TreeFamGATA1
Other databases
Probes
ProbeGATA1 Related clones (RZPD - Berlin)
PubMed
PubMed84 Pubmed reference(s) in LocusLink

Bibliography

Familial dyserythropoietic anaemia and thrombocytopenia due to an inherited mutation in GATA1.
Nichols KE, Crispino JD, Poncz M, White JG, Orkin SH, Maris JM, Weiss MJ
Nature genetics. 2000 ; 24 (3) : 266-270.
PMID 10700180
 
Different substitutions at residue D218 of the X-linked transcription factor GATA1 lead to altered clinical severity of macrothrombocytopenia and anemia and are associated with variable skewed X inactivation.
Freson K, Matthijs G, Thys C, Mariˆ´n P, Hoylaerts MF, Vermylen J, Van Geet C
Human molecular genetics. 2002 ; 11 (2) : 147-152.
PMID 11809723
 
A leukemogenic twist for GATA1.
Look AT
Nature genetics. 2002 ; 32 (1) : 83-84.
PMID 12172549
 
Acquired mutations in GATA1 in the megakaryoblastic leukemia of Down syndrome.
Wechsler J, Greene M, McDevitt MA, Anastasi J, Karp JE, Le Beau MM, Crispino JD
Nature genetics. 2002 ; 32 (1) : 148-152.
PMID 12172547
 
Acquired mutations in GATA1 in neonates with Down's syndrome with transient myeloid disorder.
Groet J, McElwaine S, Spinelli M, Rinaldi A, Burtscher I, Mulligan C, Mensah A, Cavani S, Dagna-Bricarelli F, Basso G, Cotter FE, Nizetic D
Lancet. 2003 ; 361 (9369) : 1617-1620.
PMID 12747884
 
GATA1 mutations in transient leukemia and acute megakaryoblastic leukemia of Down syndrome.
Hitzler JK, Cheung J, Li Y, Scherer SW, Zipursky A
Blood. 2003 ; 101 (11) : 4301-4304.
PMID 12586620
 
GATA1 mutations in transient leukemia and acute megakaryoblastic leukemia of Down syndrome.
Hitzler JK, Cheung J, Li Y, Scherer SW, Zipursky A
Blood. 2003 ; 101 (11) : 4301-4304.
PMID 12586620
 
Mutations in exon 2 of GATA1 are early events in megakaryocytic malignancies associated with trisomy 21.
Rainis L, Bercovich D, Strehl S, Teigler-Schlegel A, Stark B, Trka J, Amariglio N, Biondi A, Muler I, Rechavi G, Kempski H, Haas OA, Izraeli S
Blood. 2003 ; 102 (3) : 981-986.
PMID 12649131
 
Natural history of GATA1 mutations in Down syndrome.
Ahmed M, Sternberg A, Hall G, Thomas A, Smith O, O'Marcaigh A, Wynn R, Stevens R, Addison M, King D, Stewart B, Gibson B, Roberts I, Vyas P
Blood. 2004 ; 103 (7) : 2480-2489.
PMID 14656875
 
The role of cytidine deaminase and GATA1 mutations in the increased cytosine arabinoside sensitivity of Down syndrome myeloblasts and leukemia cell lines.
Ge Y, Jensen TL, Stout ML, Flatley RM, Grohar PJ, Ravindranath Y, Matherly LH, Taub JW
Cancer research. 2004 ; 64 (2) : 728-735.
PMID 14744791
 
Recent insights into the mechanisms of myeloid leukemogenesis in Down syndrome.
Gurbuxani S, Vyas P, Crispino JD
Blood. 2004 ; 103 (2) : 399-406.
PMID 14512321
 
The GATA1 mutation in an adult patient with acute megakaryoblastic leukemia not accompanying Down syndrome.
Harigae H, Xu G, Sugawara T, Ishikawa I, Toki T, Ito E
Blood. 2004 ; 103 (8) : 3242-3243.
PMID 15070711
 
Leukaemia -- a developmental perspective.
Izraeli S
British journal of haematology. 2004 ; 126 (1) : 3-10.
PMID 15198727
 
Leukaemia -- a developmental perspective.
Izraeli S
British journal of haematology. 2004 ; 126 (1) : 3-10.
PMID 15198727
 
Prenatal origin of GATA1 mutations may be an initiating step in the development of megakaryocytic leukemia in Down syndrome.
Taub JW, Mundschau G, Ge Y, Poulik JM, Qureshi F, Jensen T, James SJ, Matherly LH, Wechsler J, Crispino JD
Blood. 2004 ; 104 (5) : 1588-1589.
PMID 15317736
 
Origins of leukaemia in children with Down syndrome.
Hitzler JK, Zipursky A
Nature reviews. Cancer. 2005 ; 5 (1) : 11-20.
PMID 15630411
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written02-2005Shai Izraeli
Pediatric Hemato-Oncology, Cancer Research Center, Sheba Medical Center, Tel-Hashomer, Ramat Gan, Israel 52621

Citation

This paper should be referenced as such :
Izraeli S . GATA1 (GATA binding protein 1 (globin transcription factor1)). Atlas Genet Cytogenet Oncol Haematol. February 2005 .
URL : http://AtlasGeneticsOncology.org/Genes/GATA1ID40689chXp11.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon May 12 18:04:23 2008


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

j.l.huret@chu-poitiers.fr.