ACSL6 (acyl-CoA synthetase long-chain family member 6)

Identity

Other names	ACS2
	FACL6
	FLJ16173
	KIAA0837
	LACS2
	LACS5
HGNC	ACSL6
Location	5q31
Location_base_pair	Starts at 131317051 and ends at 131375248 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	ACSL6   16496
Entrez_Gene	ACSL6  23305  acyl-CoA synthetase long-chain family member 6
	Cards
GeneCards	ACSL6
Ensembl	ENSG00000164398 [Gene_View]  ACSL6 [Vega]
Genatlas	ACSL6
	Genomic and cartography
GoldenPath	ACSL6  -  5q31   chr5:131317051-131375248 -  5q31.1   [Description]    (hg18-March_2006)
Ensembl	ACSL6 - 5q31.1 [CytoView]
NCBI	Mapview
OMIM	604443 Disease map [OMIM]
HomoloGene	ACSL6
	Gene and transcription
Genbank	AB020644 [ ENTREZ ]
Genbank	AF099740 [ ENTREZ ]
Genbank	AF129166 [ ENTREZ ]
Genbank	AK122702 [ ENTREZ ]
Genbank	AK314452 [ ENTREZ ]
RefSeq	NM_001009185 [ SRS ]    NM_001009185 [ ENTREZ ]
RefSeq	NM_015256 [ SRS ]    NM_015256 [ ENTREZ ]
RefSeq	AC_000048 [ SRS ]    AC_000048 [ ENTREZ ]
RefSeq	AC_000137 [ SRS ]    AC_000137 [ ENTREZ ]
RefSeq	NC_000005 [ SRS ]    NC_000005 [ ENTREZ ]
RefSeq	NT_034772 [ SRS ]    NT_034772 [ ENTREZ ]
RefSeq	NW_001838952 [ SRS ]    NW_001838952 [ ENTREZ ]
RefSeq	NW_922784 [ SRS ]    NW_922784 [ ENTREZ ]
CCDS	ACSL6 CCDS - NCBI
AceView	ACSL6 AceView - NCBI
Unigene	Hs.14945 [ SRS ]    Hs.14945 [ NCBI ]
Fast-db	9445 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q108M9 [ SRS]    Q108M9 [ EXPASY ]     Q108M9 [ INTERPRO ]     Q108M9 [ UNIPROT ] Q108M9 [ VarSplice FASTA ]
Prosite	PS00455 AMP_BINDING [ SRS ]    PS00455 AMP_BINDING [ Expasy ]
Interpro	IPR000873 AMP-dep_Synth/Lig [ SRS ]    IPR000873 AMP-dep_Synth/Lig [ EBI ]
CluSTr	Q108M9
Pfam	PF00501 AMP-binding [ SRS ]    PF00501 AMP-binding [ Sanger ]    pfam00501 [ NCBI-CDD ]
Blocks	Q108M9
HPRD	09190
	Protein Interaction databases
DIP	Q108M9
IntAct	Q108M9
	Polymorphism : SNP, mutations, diseases
OMIM	604443    [ map ]
GENETests	604443
SNP	ACSL6 [dbSNP-NCBI]
SNP	NM_001009185 [SNP-NCI]
SNP	NM_015256 [SNP-NCI]
SNP	ACSL6 [GeneSNPs - Utah]  ACSL6] [HGBASE - SRS]
HAPMAP	ACSL6 [HAPMAP]
COSMIC	ACSL6 [Somatic mutation (COSMIC-CGP-Sanger)]
TICdb	magnesium [Translocation breakpoints In Cancer]
HGMD	ACSL6
Genetic Association	ACSL6
CDC HuGE	ACSL6
	General knowledge
Family Browser	ACSL6 [UCSC Family Browser]
SOURCE	NM_001009185
SOURCE	NM_015256
SMD	Hs.14945
SAGE	Hs.14945
GO	magnesium ion binding [Amigo]  magnesium ion binding
GO	catalytic activity [Amigo]  catalytic activity
GO	long-chain-fatty-acid-CoA ligase activity [Amigo]  long-chain-fatty-acid-CoA ligase activity
GO	protein binding [Amigo]  protein binding
GO	mitochondrion [Amigo]  mitochondrion
GO	mitochondrial outer membrane [Amigo]  mitochondrial outer membrane
GO	peroxisome [Amigo]  peroxisome
GO	peroxisomal membrane [Amigo]  peroxisomal membrane
GO	endoplasmic reticulum [Amigo]  endoplasmic reticulum
GO	endoplasmic reticulum membrane [Amigo]  endoplasmic reticulum membrane
GO	microsome [Amigo]  microsome
GO	plasma membrane [Amigo]  plasma membrane
GO	lipid metabolic process [Amigo]  lipid metabolic process
GO	acyl-CoA metabolic process [Amigo]  acyl-CoA metabolic process
GO	neuroblast proliferation [Amigo]  neuroblast proliferation
GO	metabolic process [Amigo]  metabolic process
GO	integral to membrane [Amigo]  integral to membrane
GO	ligase activity [Amigo]  ligase activity
KEGG	Fatty acid metabolism
KEGG	PPAR signaling pathway
KEGG	Adipocytokine signaling pathway
PubGene	ACSL6
TreeFam	ACSL6
CTD	23305 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	ACSL6 Related clones (RZPD - Berlin)
	PubMed
PubMed	12 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 13:32:26 2008