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ADNP (activity-dependent neuroprotector homeobox)

Identity

Other namesADNP1
KIAA0784
HGNC (Hugo) ADNP
Location 20q13.13
Location_base_pair Starts at 48940290 and ends at 48980934 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ADNP   15766
Entrez_Gene (NCBI)ADNP  23394  activity-dependent neuroprotector homeobox
Cards
GeneCards (Weizmann)ADNP
Ensembl (Hinxton)ENSG00000101126 [Gene_View]  ADNP [Vega]
AceView (NCBI)ADNP
Genatlas (Paris)ADNP
euGene (Indiana)23394
SOURCE (Stanford)NM_015339 NM_181442
Gene Expression (Array Express) ENSG00000101126
Genomic and cartography
GoldenPath (UCSC)ADNP  -  20q13.13   chr20:48940290-48980934 -  20q13.13   [Description]    (hg18-March_2006)
EnsemblADNP - 20q13.13 [CytoView]
Mapping of homologs : NCBIADNP [Mapview]
OMIM611386   
Gene and transcription
Gene : Genbank (Entrez)AB018327 AF250860 AK074926 AK314734 AL080163
Reference sequence (RefSeq transcript) :SRSNM_015339 NM_181442
Reference transcript : EntrezNM_015339 NM_181442
RefSeq genomic : SRSAC_000063 AC_000152 NC_000020 NT_011362 NW_001838666 NW_927339
RefSeq genomic : EntrezAC_000063 AC_000152 NC_000020 NT_011362 NW_001838666 NW_927339
Consensus coding sequences : CCDS NCBIADNP
Cluster EST : UnigeneHs.570355 [ SRS ] Hs.570355 [ NCBI ]
Alternative Splicing : Fast-db (Paris)13485
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9H2P0 (SRS) Q9H2P0 (Expasy) Q9H2P0 (Uniprot)
With graphics : InterProQ9H2P0
Splice isoforms : VarSplice FASTAQ9H2P0(VarSplice FASTA)
Domaine pattern : Prosite (SRS)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domain pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    ZINC_FINGER_C2H2_1 (PS00028)    ZINC_FINGER_C2H2_2 (PS50157)   
Domains : Interpro (SRS)Homeobox    Homeodomain-like    Znf_C2H2    Znf_C2H2-like   
Domains : Interpro (EBI)Homeobox    Homeodomain-like    Znf_C2H2    Znf_C2H2-like   
Related proteins : CluSTrQ9H2P0
Domain families : Pfam SRSHomeobox (PF00046)   
Domain families : Pfam SangerHomeobox (PF00046)   
Domain families : Pfam NCBIpfam00046   
Domain families : Smart EMBLHOX (SM00389)  ZnF_C2H2 (SM00355)  
Blocks (Seattle)Q9H2P0
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD09793
Protein Interaction databases
DIP (DOE-UCLA)Q9H2P0
IntAct (EBI)Q9H2P0
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIADNP
SNP : GeneSNP UtahADNP
SNP : HGBaseADNP
Genetic variants : HAPMAPADNP
Somatic Mutations in Cancer : COSMICADNP 
Mutations and Diseases : HGMDADNP
Hereditary diseases : OMIM611386   
Hereditary diseases : GENETests611386   
Diseases : Genetic AssociationADNP
General knowledge
Homologs : HomoloGeneADNP
Homology/Alignments : Family Browser UCSCADNP
Phylogenetic Trees/Animal Genes : TreeFamADNP
Chemical/Protein Interactions : CTD23394
Keywords Ontology : AmiGOchromatin binding  transcription factor activity  dolichyl-phosphate beta-D-mannosyltransferase activity  protein binding  extracellular space  intracellular  nucleus  nucleolus  regulation of transcription, DNA-dependent  GPI anchor biosynthetic process  zinc ion binding  dolichol metabolic process  negative regulation of neuron apoptosis  sequence-specific DNA binding  metal ion binding  
Keywords Ontology : EGO-EBIchromatin binding  transcription factor activity  dolichyl-phosphate beta-D-mannosyltransferase activity  protein binding  extracellular space  intracellular  nucleus  nucleolus  regulation of transcription, DNA-dependent  GPI anchor biosynthetic process  zinc ion binding  dolichol metabolic process  negative regulation of neuron apoptosis  sequence-specific DNA binding  metal ion binding  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesADNP Related clones (RZPD - Berlin)
Literature
PubMed10 Pubmed reference(s) in Entrez
PubGeneADNP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:37:32 CET 2010
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