AGRN (agrin)

Identity

Other names	FLJ45064
HGNC	AGRN
Location	1p36.33
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	AGRN   329
Entrez_Gene	AGRN  375790  agrin
	Cards
GeneCards	AGRN
Ensembl	AGRN [Search_View]   ENSG00000188157 [Gene_View]
Genatlas	AGRN
GeneLynx	AGRN
eGenome	AGRN
euGene	375790
	Genomic and cartography
GoldenPath	AGRN  -  1p36.33   chr1:945366-981355 +  1p36.33   [Description]    (hg18-March_2006)
Ensembl	AGRN - 1p36.33 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	AGRN
	Gene and transcription
Genbank	AB191264 [ ENTREZ ]
Genbank	AF016903 [ ENTREZ ]
Genbank	AK021586 [ ENTREZ ]
Genbank	AK125197 [ ENTREZ ]
Genbank	AK128761 [ ENTREZ ]
RefSeq	NM_198576 [ SRS ]    NM_198576 [ ENTREZ ]
RefSeq	AC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeq	AC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeq	NC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeq	NT_004350 [ SRS ]    NT_004350 [ ENTREZ ]
RefSeq	NW_001838585 [ SRS ]    NW_001838585 [ ENTREZ ]
RefSeq	NW_921350 [ SRS ]    NW_921350 [ ENTREZ ]
AceView	AGRN AceView - NCBI
Unigene	Hs.273330 [ SRS ]    Hs.273330 [ NCBI ]     HS273330 [ spliceNest ]
Fast-db	262 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O00468 [ SRS]    O00468 [ EXPASY ]     O00468 [ INTERPRO ]     O00468 [ UNIPROT ]
Prosite	PS00022 EGF_1 [ SRS ]    PS00022 EGF_1 [ Expasy ]
Prosite	PS01186 EGF_2 [ SRS ]    PS01186 EGF_2 [ Expasy ]
Prosite	PS50026 EGF_3 [ SRS ]    PS50026 EGF_3 [ Expasy ]
Prosite	PS01248 EGF_LAM_1 [ SRS ]    PS01248 EGF_LAM_1 [ Expasy ]
Prosite	PS50027 EGF_LAM_2 [ SRS ]    PS50027 EGF_LAM_2 [ Expasy ]
Prosite	PS50025 LAM_G_DOMAIN [ SRS ]    PS50025 LAM_G_DOMAIN [ Expasy ]
Prosite	PS51121 NTA [ SRS ]    PS51121 NTA [ Expasy ]
Prosite	PS50024 SEA [ SRS ]    PS50024 SEA [ Expasy ]
Interpro	IPR004850 Agrin_NtA [ SRS ]    IPR004850 Agrin_NtA [ EBI ]
Interpro	IPR013320 ConA_like_subgrp [ SRS ]    IPR013320 ConA_like_subgrp [ EBI ]
Interpro	IPR006210 EGF [ SRS ]    IPR006210 EGF [ EBI ]
Interpro	IPR000742 EGF_3 [ SRS ]    IPR000742 EGF_3 [ EBI ]
Interpro	IPR002049 EGF_laminin [ SRS ]    IPR002049 EGF_laminin [ EBI ]
Interpro	IPR006209 EGF_like [ SRS ]    IPR006209 EGF_like [ EBI ]
Interpro	IPR013032 EGF_like_reg_CS [ SRS ]    IPR013032 EGF_like_reg_CS [ EBI ]
Interpro	IPR003645 Fol_N [ SRS ]    IPR003645 Fol_N [ EBI ]
Interpro	IPR001791 Laminin_G [ SRS ]    IPR001791 Laminin_G [ EBI ]
Interpro	IPR012679 Laminin_G_1 [ SRS ]    IPR012679 Laminin_G_1 [ EBI ]
Interpro	IPR002350 Prot_inh_Kazal [ SRS ]    IPR002350 Prot_inh_Kazal [ EBI ]
Interpro	IPR000082 SEA [ SRS ]    IPR000082 SEA [ EBI ]
CluSTr	O00468
Pfam	PF00008 EGF [ SRS ]    PF00008 EGF [ Sanger ]    pfam00008 [ NCBI-CDD ]
Pfam	PF00050 Kazal_1 [ SRS ]    PF00050 Kazal_1 [ Sanger ]    pfam00050 [ NCBI-CDD ]
Pfam	PF00053 Laminin_EGF [ SRS ]    PF00053 Laminin_EGF [ Sanger ]    pfam00053 [ NCBI-CDD ]
Pfam	PF00054 Laminin_G_1 [ SRS ]    PF00054 Laminin_G_1 [ Sanger ]    pfam00054 [ NCBI-CDD ]
Pfam	PF03146 NtA [ SRS ]    PF03146 NtA [ Sanger ]    pfam03146 [ NCBI-CDD ]
Pfam	PF01390 SEA [ SRS ]    PF01390 SEA [ Sanger ]    pfam01390 [ NCBI-CDD ]
Smart	SM00181 EGF [EMBL]
Smart	SM00180 EGF_Lam [EMBL]
Smart	SM00274 FOLN [EMBL]
Smart	SM00280 KAZAL [EMBL]
Smart	SM00282 LamG [EMBL]
Smart	SM00200 SEA [EMBL]
Blocks	O00468
HPRD	10550
	Protein Interaction databases
DIP	O00468
IntAct	O00468
	Polymorphism : SNP, mutations, diseases
OMIM	103320    [ map ]
GENECLINICS	103320
SNP	AGRN [dbSNP-NCBI]
SNP	NM_198576 [SNP-NCI]
SNP	AGRN [GeneSNPs - Utah]  AGRN] [HGBASE - SRS]
HAPMAP	AGRN [HAPMAP]
HGMD	AGRN
	General knowledge
Family Browser	AGRN [UCSC Family Browser]
SOURCE	NM_198576
SMD	Hs.273330
SAGE	Hs.273330
GO	structural constituent of cytoskeleton [Amigo]  structural constituent of cytoskeleton
GO	extracellular region [Amigo]  extracellular region
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	basal lamina [Amigo]  basal lamina
GO	signal transduction [Amigo]  signal transduction
GO	acetylcholine receptor signaling, muscarinic pathway [Amigo]  acetylcholine receptor signaling, muscarinic pathway
GO	receptor clustering [Amigo]  receptor clustering
GO	receptor clustering [Amigo]  receptor clustering
GO	laminin binding [Amigo]  laminin binding
GO	clustering of voltage-gated sodium channels [Amigo]  clustering of voltage-gated sodium channels
GO	synapse organization and biogenesis [Amigo]  synapse organization and biogenesis
BIOCARTA	Agrin in Postsynaptic Differentiation    [Genes]
KEGG	ECM-receptor interaction
PubGene	AGRN
TreeFam	AGRN
CTD	375790 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	AGRN Related clones (RZPD - Berlin)
	PubMed
PubMed	22 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 19:59:24 2008