AICDA (activation-induced cytidine deaminase)

Identity

Other names	AID
	ARP2
	CDA2
	HIGM2
HGNC	AICDA
Location	12p13
Location_base_pair	Starts at 8646029 and ends at 8656706 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	AICDA   13203
Entrez_Gene	AICDA  57379  activation-induced cytidine deaminase
	Cards
GeneCards	AICDA
Ensembl	ENSG00000111732 [Gene_View]  AICDA [Vega]
Genatlas	AICDA
	Genomic and cartography
GoldenPath	AICDA  -  12p13   chr12:8646029-8656706 -  12p13.31   [Description]    (hg18-March_2006)
Ensembl	AICDA - 12p13.31 [CytoView]
NCBI	Mapview
OMIM	605257 Disease map [OMIM]
OMIM	605258 Disease map [OMIM]
HomoloGene	AICDA
	Gene and transcription
Genbank	AB040431 [ ENTREZ ]
Genbank	AF529815 [ ENTREZ ]
Genbank	AF529816 [ ENTREZ ]
Genbank	AF529817 [ ENTREZ ]
Genbank	AF529818 [ ENTREZ ]
RefSeq	NM_020661 [ SRS ]    NM_020661 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	AC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_009714 [ SRS ]    NT_009714 [ ENTREZ ]
RefSeq	NW_001838051 [ SRS ]    NW_001838051 [ ENTREZ ]
RefSeq	NW_925295 [ SRS ]    NW_925295 [ ENTREZ ]
CCDS	AICDA CCDS - NCBI
AceView	AICDA AceView - NCBI
Unigene	Hs.149342 [ SRS ]    Hs.149342 [ NCBI ]
Fast-db	2031 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q546Y9 [ SRS]    Q546Y9 [ EXPASY ]     Q546Y9 [ INTERPRO ]     Q546Y9 [ UNIPROT ] Q546Y9 [ VarSplice FASTA ]
Prosite	PS00903 CYT_DCMP_DEAMINASES [ SRS ]    PS00903 CYT_DCMP_DEAMINASES [ Expasy ]
Interpro	IPR016192 APOBEC/CMP_deaminase_Zn-bd [ SRS ]    IPR016192 APOBEC/CMP_deaminase_Zn-bd [ EBI ]
Interpro	IPR007904 APOBEC_C [ SRS ]    IPR007904 APOBEC_C [ EBI ]
Interpro	IPR013158 APOBEC_N [ SRS ]    IPR013158 APOBEC_N [ EBI ]
CluSTr	Q546Y9
Pfam	PF05240 APOBEC_C [ SRS ]    PF05240 APOBEC_C [ Sanger ]    pfam05240 [ NCBI-CDD ]
Pfam	PF08210 APOBEC_N [ SRS ]    PF08210 APOBEC_N [ Sanger ]    pfam08210 [ NCBI-CDD ]
Blocks	Q546Y9
HPRD	05585
	Protein Interaction databases
DIP	Q546Y9
IntAct	Q546Y9
	Polymorphism : SNP, mutations, diseases
OMIM	605257    [ map ]
OMIM	605258    [ map ]
GENETests	605257
GENETests	605258
SNP	AICDA [dbSNP-NCBI]
SNP	NM_020661 [SNP-NCI]
SNP	AICDA [GeneSNPs - Utah]  AICDA] [HGBASE - SRS]
HAPMAP	AICDA [HAPMAP]
COSMIC	AICDA [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	AICDA
Genetic Association	AICDA
CDC HuGE	AICDA
	General knowledge
Family Browser	AICDA [UCSC Family Browser]
SOURCE	NM_020661
SMD	Hs.149342
SAGE	Hs.149342
GO	cytidine deaminase activity [Amigo]  cytidine deaminase activity
GO	cellular_component [Amigo]  cellular_component
GO	cytoplasm [Amigo]  cytoplasm
GO	mRNA processing [Amigo]  mRNA processing
GO	zinc ion binding [Amigo]  zinc ion binding
GO	hydrolase activity [Amigo]  hydrolase activity
GO	B cell differentiation [Amigo]  B cell differentiation
GO	metal ion binding [Amigo]  metal ion binding
BIOCARTA	Y branching of actin filaments    [Genes]
BIOCARTA	Role of PI3K subunit p85 in regulation of Actin Organization and Cell Migration    [Genes]
BIOCARTA	How Progesterone Initiates the Oocyte Maturation    [Genes]
BIOCARTA	Rho cell motility signaling pathway    [Genes]
BIOCARTA	How does salmonella hijack a cell    [Genes]
KEGG	Pyrimidine metabolism
PubGene	AICDA
TreeFam	AICDA
CTD	57379 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	AICDA Related clones (RZPD - Berlin)
	PubMed
PubMed	67 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu Nov 27 13:33:12 2008