Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ANKRD10 (ankyrin repeat domain 10)

Identity

Other namesDKFZp686B07190
FLJ20093
HGNC (Hugo) ANKRD10
Location 13q34
Location_base_pair Starts at 110328888 and ends at 110365417 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ANKRD10   20265
Entrez_Gene (NCBI)ANKRD10  55608  ankyrin repeat domain 10
Cards
GeneCards (Weizmann)ANKRD10
Ensembl (Hinxton)ENSG00000088448 [Gene_View]  ANKRD10 [Vega]
AceView (NCBI)ANKRD10
Genatlas (Paris)ANKRD10
euGene (Indiana)55608
SOURCE (Stanford)NM_017664
Gene Expression (Array Express) ENSG00000088448
Genomic and cartography
GoldenPath (UCSC)ANKRD10  -  13q34   chr13:110328888-110365417 -  13q34   [Description]    (hg18-March_2006)
EnsemblANKRD10 - 13q34 [CytoView]
Mapping of homologs : NCBIANKRD10 [Mapview]
OMIM
Gene and transcription
Gene : Genbank (Entrez)AK000100 AK000111 AK026017 AK094222 AK095763
Reference sequence (RefSeq transcript) :SRSNM_017664
Reference transcript : EntrezNM_017664
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_009952 NW_001838084 NW_925517
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_009952 NW_001838084 NW_925517
Consensus coding sequences : CCDS NCBIANKRD10
Cluster EST : UnigeneHs.525163 [ SRS ] Hs.525163 [ NCBI ]
Alternative Splicing : Fast-db (Paris)9153
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9NXR5 (SRS) Q9NXR5 (Expasy) Q9NXR5 (Uniprot)
With graphics : InterProQ9NXR5
Splice isoforms : VarSplice FASTAQ9NXR5(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domain pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (SRS)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom   
Related proteins : CluSTrQ9NXR5
Domain families : Pfam SRSAnk (PF00023)   
Domain families : Pfam SangerAnk (PF00023)   
Domain families : Pfam NCBIpfam00023   
Domain families : Smart EMBLANK (SM00248)  
Blocks (Seattle)Q9NXR5
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD12455
Protein Interaction databases
DIP (DOE-UCLA)Q9NXR5
IntAct (EBI)Q9NXR5
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIANKRD10
SNP : GeneSNP UtahANKRD10
SNP : HGBaseANKRD10
Genetic variants : HAPMAPANKRD10
Somatic Mutations in Cancer : COSMICANKRD10 
Mutations and Diseases : HGMDANKRD10
Hereditary diseases : OMIM
Hereditary diseases : GENETests
Diseases : Genetic AssociationANKRD10
General knowledge
Homologs : HomoloGeneANKRD10
Homology/Alignments : Family Browser UCSCANKRD10
Phylogenetic Trees/Animal Genes : TreeFamANKRD10
Chemical/Protein Interactions : CTD55608
Keywords Ontology : AmiGO
Keywords Ontology : EGO-EBI
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesANKRD10 Related clones (RZPD - Berlin)
Literature
PubMed2 Pubmed reference(s) in Entrez
PubGeneANKRD10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:33:47 CET 2010
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