APOB (apolipoprotein B (including Ag(x) antigen))

Identity

Other names	FLDB
HGNC	APOB
Location	2p24-p23
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	APOB   603
Entrez_Gene	APOB  338  apolipoprotein B (including Ag(x) antigen)
	Cards
GeneCards	APOB
Ensembl	APOB [Search_View]   ENSG00000084674 [Gene_View]
Genatlas	APOB
GeneLynx	APOB
eGenome	APOB
euGene	338
	Genomic and cartography
GoldenPath	APOB  -     chr2:21077806-21120450 -  2p24.1   [Description]    (hg18-March_2006)
Ensembl	APOB - 2p24.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	APOB
	Gene and transcription
Genbank	AB208846 [ ENTREZ ]
Genbank	AK290844 [ ENTREZ ]
Genbank	BC051278 [ ENTREZ ]
Genbank	J02610 [ ENTREZ ]
Genbank	K03175 [ ENTREZ ]
RefSeq	NM_000384 [ SRS ]    NM_000384 [ ENTREZ ]
RefSeq	AC_000045 [ SRS ]    AC_000045 [ ENTREZ ]
RefSeq	AC_000134 [ SRS ]    AC_000134 [ ENTREZ ]
RefSeq	NC_000002 [ SRS ]    NC_000002 [ ENTREZ ]
RefSeq	NT_022184 [ SRS ]    NT_022184 [ ENTREZ ]
RefSeq	NW_001838768 [ SRS ]    NW_001838768 [ ENTREZ ]
RefSeq	NW_927719 [ SRS ]    NW_927719 [ ENTREZ ]
AceView	APOB AceView - NCBI
Unigene	Hs.120759 [ SRS ]    Hs.120759 [ NCBI ]     HS120759 [ spliceNest ]
Fast-db	1869 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P04114 [ SRS]    P04114 [ EXPASY ]     P04114 [ INTERPRO ]     P04114 [ UNIPROT ]
Prosite	PS51211 VITELLOGENIN [ SRS ]    PS51211 VITELLOGENIN [ Expasy ]
Interpro	IPR001747 Lipid_transpt_N [ SRS ]    IPR001747 Lipid_transpt_N [ EBI ]
Interpro	IPR009454 Lipid_transpt_open_b-sht [ SRS ]    IPR009454 Lipid_transpt_open_b-sht [ EBI ]
Interpro	IPR015255 Vitellinogen_open_b-sht [ SRS ]    IPR015255 Vitellinogen_open_b-sht [ EBI ]
Interpro	IPR011030 Vitellinogen_superhlx [ SRS ]    IPR011030 Vitellinogen_superhlx [ EBI ]
CluSTr	P04114
Pfam	PF06448 DUF1081 [ SRS ]    PF06448 DUF1081 [ Sanger ]    pfam06448 [ NCBI-CDD ]
Pfam	PF09172 DUF1943 [ SRS ]    PF09172 DUF1943 [ Sanger ]    pfam09172 [ NCBI-CDD ]
Pfam	PF01347 Vitellogenin_N [ SRS ]    PF01347 Vitellogenin_N [ Sanger ]    pfam01347 [ NCBI-CDD ]
Smart	SM00638 LPD_N [EMBL]
Blocks	P04114
HPRD	00133
	Protein Interaction databases
DIP	P04114
IntAct	P04114
	Polymorphism : SNP, mutations, diseases
OMIM	107730;144010    [ map ]
GENECLINICS	107730;144010
SNP	APOB [dbSNP-NCBI]
SNP	NM_000384 [SNP-NCI]
SNP	APOB [GeneSNPs - Utah]  APOB] [HGBASE - SRS]
HAPMAP	APOB [HAPMAP]
HGMD	APOB
	General knowledge
Family Browser	APOB [UCSC Family Browser]
SOURCE	NM_000384
SMD	Hs.120759
SAGE	Hs.120759
GO	lipid transporter activity [Amigo]  lipid transporter activity
GO	phospholipid binding [Amigo]  phospholipid binding
GO	extracellular region [Amigo]  extracellular region
GO	extracellular region [Amigo]  extracellular region
GO	endoplasmic reticulum [Amigo]  endoplasmic reticulum
GO	endoplasmic reticulum lumen [Amigo]  endoplasmic reticulum lumen
GO	microsome [Amigo]  microsome
GO	plasma membrane [Amigo]  plasma membrane
GO	lipid metabolic process [Amigo]  lipid metabolic process
GO	triacylglycerol mobilization [Amigo]  triacylglycerol mobilization
GO	lipid transport [Amigo]  lipid transport
GO	heparin binding [Amigo]  heparin binding
GO	steroid metabolic process [Amigo]  steroid metabolic process
GO	cholesterol metabolic process [Amigo]  cholesterol metabolic process
GO	endosome membrane [Amigo]  endosome membrane
GO	cholesterol transporter activity [Amigo]  cholesterol transporter activity
GO	cholesterol transport [Amigo]  cholesterol transport
GO	clathrin-coated endocytic vesicle membrane [Amigo]  clathrin-coated endocytic vesicle membrane
GO	endosome lumen [Amigo]  endosome lumen
GO	chylomicron [Amigo]  chylomicron
GO	cholesterol homeostasis [Amigo]  cholesterol homeostasis
GO	protein heterodimerization activity [Amigo]  protein heterodimerization activity
GO	low-density lipoprotein receptor binding [Amigo]  low-density lipoprotein receptor binding
PubGene	APOB
TreeFam	APOB
CTD	338 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	APOB Related clones (RZPD - Berlin)
	PubMed
PubMed	313 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:00:28 2008