APOBEC1 (apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1)

Identity

Other names	APOBEC-1
	BEDP
	CDAR1
	HEPR
HGNC	APOBEC1
Location	12p13.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	APOBEC1   604
Entrez_Gene	APOBEC1  339  apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
	Cards
GeneCards	APOBEC1
Ensembl	APOBEC1 [Search_View]   ENSG00000111701 [Gene_View]
Genatlas	APOBEC1
GeneLynx	APOBEC1
eGenome	APOBEC1
euGene	339
	Genomic and cartography
GoldenPath	APOBEC1  -  12p13.1   chr12:7693263-7709769 -  12p13.31   [Description]    (hg18-March_2006)
Ensembl	APOBEC1 - 12p13.31 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	APOBEC1
	Gene and transcription
Genbank	AI862416 [ ENTREZ ]
Genbank	BC096158 [ ENTREZ ]
Genbank	BC096159 [ ENTREZ ]
Genbank	BC096160 [ ENTREZ ]
Genbank	BC096161 [ ENTREZ ]
RefSeq	NM_001644 [ SRS ]    NM_001644 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	AC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_009714 [ SRS ]    NT_009714 [ ENTREZ ]
RefSeq	NW_001838051 [ SRS ]    NW_001838051 [ ENTREZ ]
RefSeq	NW_925295 [ SRS ]    NW_925295 [ ENTREZ ]
AceView	APOBEC1 AceView - NCBI
Unigene	Hs.560 [ SRS ]    Hs.560 [ NCBI ]     HS560 [ spliceNest ]
Fast-db	1811 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P41238 [ SRS]    P41238 [ EXPASY ]     P41238 [ INTERPRO ]     P41238 [ UNIPROT ]
Prosite	PS00903 CYT_DCMP_DEAMINASES [ SRS ]    PS00903 CYT_DCMP_DEAMINASES [ Expasy ]
Interpro	IPR016192 APOBEC/CMP_deaminase_Zn-bd [ SRS ]    IPR016192 APOBEC/CMP_deaminase_Zn-bd [ EBI ]
Interpro	IPR007904 APOBEC_C [ SRS ]    IPR007904 APOBEC_C [ EBI ]
Interpro	IPR013158 APOBEC_N [ SRS ]    IPR013158 APOBEC_N [ EBI ]
CluSTr	P41238
Pfam	PF05240 APOBEC_C [ SRS ]    PF05240 APOBEC_C [ Sanger ]    pfam05240 [ NCBI-CDD ]
Pfam	PF08210 APOBEC_N [ SRS ]    PF08210 APOBEC_N [ Sanger ]    pfam08210 [ NCBI-CDD ]
Blocks	P41238
HPRD	02531
	Protein Interaction databases
DIP	P41238
IntAct	P41238
	Polymorphism : SNP, mutations, diseases
OMIM	600130    [ map ]
GENECLINICS	600130
SNP	APOBEC1 [dbSNP-NCBI]
SNP	NM_001644 [SNP-NCI]
SNP	APOBEC1 [GeneSNPs - Utah]  APOBEC1] [HGBASE - SRS]
HAPMAP	APOBEC1 [HAPMAP]
COSMIC	APOBEC1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	APOBEC1
	General knowledge
Family Browser	APOBEC1 [UCSC Family Browser]
SOURCE	NM_001644
SMD	Hs.560
SAGE	Hs.560
Enzyme	3.5.4.- [ Enzyme-Expasy ]   3.5.4.- [ Enzyme-SRS ]   3.5.4.- [ IntEnz-EBI ]   3.5.4.- [ BRENDA ]   3.5.4.- [ KEGG ]   3.5.4.- [ WIT ]
GO	RNA binding [Amigo]  RNA binding
GO	cytidine deaminase activity [Amigo]  cytidine deaminase activity
GO	protein binding [Amigo]  protein binding
GO	mRNA processing [Amigo]  mRNA processing
GO	lipid metabolic process [Amigo]  lipid metabolic process
GO	zinc ion binding [Amigo]  zinc ion binding
GO	cytidine to uridine editing [Amigo]  cytidine to uridine editing
GO	mRNA modification [Amigo]  mRNA modification
GO	hydrolase activity [Amigo]  hydrolase activity
GO	lipoprotein metabolic process [Amigo]  lipoprotein metabolic process
GO	metal ion binding [Amigo]  metal ion binding
KEGG	Atrazine degradation
PubGene	APOBEC1
TreeFam	APOBEC1
CTD	339 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	APOBEC1 Related clones (RZPD - Berlin)
	PubMed
PubMed	28 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:00:29 2008