Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ARL11 (ADP-ribosylation factor-like 11)

Identity

Other namesARLTS1
FLJ33930
MGC17429
HGNC (Hugo) ARL11
Location 13q14.3
Location_base_pair Starts at 49100625 and ends at 49105732 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARL11   24046
Entrez_Gene (NCBI)ARL11  115761  ADP-ribosylation factor-like 11
Cards
GeneCards (Weizmann)ARL11
Ensembl (Hinxton)ENSG00000152213 [Gene_View]  ARL11 [Vega]
AceView (NCBI)ARL11
Genatlas (Paris)ARL11
euGene (Indiana)115761
SOURCE (Stanford)NM_138450
Gene Expression (Array Express) ENSG00000152213
Genomic and cartography
GoldenPath (UCSC)ARL11  -  13q14.3   chr13:49100625-49105732 +  13q14.3   [Description]    (hg18-March_2006)
EnsemblARL11 - 13q14.3 [CytoView]
Mapping of homologs : NCBIARL11 [Mapview]
OMIM151400   609351   
Gene and transcription
Gene : Genbank (Entrez)AF441378 AK091249 BC013150 CR600646
Reference sequence (RefSeq transcript) :SRSNM_138450
Reference transcript : EntrezNM_138450
RefSeq genomic : SRSAC_000056 AC_000145 NC_000013 NT_024524 NW_001838074 NW_925473
RefSeq genomic : EntrezAC_000056 AC_000145 NC_000013 NT_024524 NW_001838074 NW_925473
Consensus coding sequences : CCDS NCBIARL11
Cluster EST : UnigeneHs.558599 [ SRS ] Hs.558599 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5437
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ969Q4 (SRS) Q969Q4 (Expasy) Q969Q4 (Uniprot)
With graphics : InterProQ969Q4
Splice isoforms : VarSplice FASTAQ969Q4(VarSplice FASTA)
Domaine pattern : Prosite (SRS)ARF (PS51417)   
Domain pattern : Prosite (Expaxy)ARF (PS51417)   
Domains : Interpro (SRS)ARF    ARF/SAR    Small_GTP_bd   
Domains : Interpro (EBI)ARF    ARF/SAR    Small_GTP_bd   
Related proteins : CluSTrQ969Q4
Domain families : Pfam SRSArf (PF00025)   
Domain families : Pfam SangerArf (PF00025)   
Domain families : Pfam NCBIpfam00025   
Domain families : Smart EMBLARF (SM00177)  
Blocks (Seattle)Q969Q4
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD12484
Protein Interaction databases
DIP (DOE-UCLA)Q969Q4
IntAct (EBI)Q969Q4
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIARL11
SNP : GeneSNP UtahARL11
SNP : HGBaseARL11
Genetic variants : HAPMAPARL11
Somatic Mutations in Cancer : COSMICARL11 
Mutations and Diseases : HGMDARL11
Hereditary diseases : OMIM151400    609351   
Hereditary diseases : GENETests151400    609351   
Diseases : Genetic AssociationARL11
General knowledge
Homologs : HomoloGeneARL11
Homology/Alignments : Family Browser UCSCARL11
Phylogenetic Trees/Animal Genes : TreeFamARL11
Chemical/Protein Interactions : CTD115761
Keywords Ontology : AmiGOnucleotide binding  protein binding  GTP binding  intracellular  small GTPase mediated signal transduction  
Keywords Ontology : EGO-EBInucleotide binding  protein binding  GTP binding  intracellular  small GTPase mediated signal transduction  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesARL11 Related clones (RZPD - Berlin)
Literature
PubMed18 Pubmed reference(s) in Entrez
PubGeneARL11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:33:24 CET 2010
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