BRPF1 (bromodomain and PHD finger containing, 1)

Identity

Other names	BR140
HGNC	BRPF1
Location	3p26-p25
Location_base_pair	Starts at 9748434 and ends at 9764699 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	BRPF1   14255
Entrez_Gene	BRPF1  7862  bromodomain and PHD finger containing, 1
	Cards
GeneCards	BRPF1
Ensembl	BRPF1 [Search_View]   ENSG00000156983 [Gene_View]
Genatlas	BRPF1
GeneLynx	BRPF1
eGenome	BRPF1
euGene	7862
	Genomic and cartography
GoldenPath	BRPF1  -     chr3:9748434-9764699 +  3p25.3   [Description]    (hg18-March_2006)
Ensembl	BRPF1 - 3p25.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	BRPF1
	Gene and transcription
Genbank	AI356310 [ ENTREZ ]
Genbank	AK293865 [ ENTREZ ]
Genbank	AL713696 [ ENTREZ ]
Genbank	BC036374 [ ENTREZ ]
Genbank	BC053851 [ ENTREZ ]
RefSeq	NM_001003694 [ SRS ]    NM_001003694 [ ENTREZ ]
RefSeq	NM_004634 [ SRS ]    NM_004634 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838876 [ SRS ]    NW_001838876 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
AceView	BRPF1 AceView - NCBI
Unigene	Hs.1004 [ SRS ]    Hs.1004 [ NCBI ]     HS1004 [ spliceNest ]
Fast-db	1347 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P55201 [ SRS]    P55201 [ EXPASY ]     P55201 [ INTERPRO ]     P55201 [ UNIPROT ]
Prosite	PS00633 BROMODOMAIN_1 [ SRS ]    PS00633 BROMODOMAIN_1 [ Expasy ]
Prosite	PS50014 BROMODOMAIN_2 [ SRS ]    PS50014 BROMODOMAIN_2 [ Expasy ]
Prosite	PS50812 PWWP [ SRS ]    PS50812 PWWP [ Expasy ]
Prosite	PS01359 ZF_PHD_1 [ SRS ]    PS01359 ZF_PHD_1 [ Expasy ]
Prosite	PS50016 ZF_PHD_2 [ SRS ]    PS50016 ZF_PHD_2 [ Expasy ]
Prosite	PS00028 ZINC_FINGER_C2H2_1 [ SRS ]    PS00028 ZINC_FINGER_C2H2_1 [ Expasy ]
Prosite	PS50157 ZINC_FINGER_C2H2_2 [ SRS ]    PS50157 ZINC_FINGER_C2H2_2 [ Expasy ]
Interpro	IPR001487 Bromodomain [ SRS ]    IPR001487 Bromodomain [ EBI ]
Interpro	IPR000313 PWWP [ SRS ]    IPR000313 PWWP [ EBI ]
Interpro	IPR007087 Znf_C2H2 [ SRS ]    IPR007087 Znf_C2H2 [ EBI ]
Interpro	IPR015880 Znf_C2H2-like [ SRS ]    IPR015880 Znf_C2H2-like [ EBI ]
Interpro	IPR001965 Znf_PHD [ SRS ]    IPR001965 Znf_PHD [ EBI ]
Interpro	IPR013083 Znf_RING/FYVE/PHD [ SRS ]    IPR013083 Znf_RING/FYVE/PHD [ EBI ]
CluSTr	P55201
Pfam	PF00439 Bromodomain [ SRS ]    PF00439 Bromodomain [ Sanger ]    pfam00439 [ NCBI-CDD ]
Pfam	PF00628 PHD [ SRS ]    PF00628 PHD [ Sanger ]    pfam00628 [ NCBI-CDD ]
Pfam	PF00855 PWWP [ SRS ]    PF00855 PWWP [ Sanger ]    pfam00855 [ NCBI-CDD ]
Smart	SM00297 BROMO [EMBL]
Smart	SM00249 PHD [EMBL]
Smart	SM00293 PWWP [EMBL]
Smart	SM00355 ZnF_C2H2 [EMBL]
Blocks	P55201
PDB	2D9E [ SRS ]    2D9E [ PdbSum ],   2D9E [ IMB ]   2D9E [ RSDB ]
HPRD	03875
	Protein Interaction databases
DIP	P55201
IntAct	P55201
	Polymorphism : SNP, mutations, diseases
OMIM	602410    [ map ]
GENECLINICS	602410
SNP	BRPF1 [dbSNP-NCBI]
SNP	NM_001003694 [SNP-NCI]
SNP	NM_004634 [SNP-NCI]
SNP	BRPF1 [GeneSNPs - Utah]  BRPF1] [HGBASE - SRS]
HAPMAP	BRPF1 [HAPMAP]
HGMD	BRPF1
	General knowledge
Family Browser	BRPF1 [UCSC Family Browser]
SOURCE	NM_001003694
SOURCE	NM_004634
SMD	Hs.1004
SAGE	Hs.1004
GO	DNA binding [Amigo]  DNA binding
GO	protein binding [Amigo]  protein binding
GO	intracellular [Amigo]  intracellular
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	zinc ion binding [Amigo]  zinc ion binding
GO	metal ion binding [Amigo]  metal ion binding
PubGene	BRPF1
TreeFam	BRPF1
CTD	7862 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	BRPF1 Related clones (RZPD - Berlin)
	PubMed
PubMed	5 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:32:37 2008