CCL21 (chemokine (C-C motif) ligand 21)

Identity

Other names	6Ckine
	CKb9
	ECL
	MGC34555
	SCYA21
	SLC
	TCA4
HGNC	CCL21
Location	9p13
Location_base_pair	Starts at 34699002 and ends at 34700147 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CCL21   10620
Entrez_Gene	CCL21  6366  chemokine (C-C motif) ligand 21
	Cards
GeneCards	CCL21
Ensembl	CCL21 [Search_View]   ENSG00000137077 [Gene_View]
Genatlas	CCL21
GeneLynx	CCL21
eGenome	CCL21
euGene	6366
	Genomic and cartography
GoldenPath	CCL21  -  9p13   chr9:34699002-34700147 -  9p13.3   [Description]    (hg18-March_2006)
Ensembl	CCL21 - 9p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CCL21
	Gene and transcription
Genbank	AB002409 [ ENTREZ ]
Genbank	AF001979 [ ENTREZ ]
Genbank	AK311901 [ ENTREZ ]
Genbank	AY358887 [ ENTREZ ]
Genbank	BC027918 [ ENTREZ ]
RefSeq	NM_002989 [ SRS ]    NM_002989 [ ENTREZ ]
RefSeq	AC_000052 [ SRS ]    AC_000052 [ ENTREZ ]
RefSeq	AC_000141 [ SRS ]    AC_000141 [ ENTREZ ]
RefSeq	NC_000009 [ SRS ]    NC_000009 [ ENTREZ ]
RefSeq	NT_008413 [ SRS ]    NT_008413 [ ENTREZ ]
RefSeq	NW_001839149 [ SRS ]    NW_001839149 [ ENTREZ ]
RefSeq	NW_924062 [ SRS ]    NW_924062 [ ENTREZ ]
AceView	CCL21 AceView - NCBI
Unigene	Hs.57907 [ SRS ]    Hs.57907 [ NCBI ]     HS57907 [ spliceNest ]
Fast-db	5665 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O00585 [ SRS]    O00585 [ EXPASY ]     O00585 [ INTERPRO ]     O00585 [ UNIPROT ]
Prosite	PS00472 SMALL_CYTOKINES_CC [ SRS ]    PS00472 SMALL_CYTOKINES_CC [ Expasy ]
Interpro	IPR000827 CC_chemkine_sml_CS [ SRS ]    IPR000827 CC_chemkine_sml_CS [ EBI ]
Interpro	IPR001811 Chemokine_IL8 [ SRS ]    IPR001811 Chemokine_IL8 [ EBI ]
CluSTr	O00585
Pfam	PF00048 IL8 [ SRS ]    PF00048 IL8 [ Sanger ]    pfam00048 [ NCBI-CDD ]
Smart	SM00199 SCY [EMBL]
Blocks	O00585
HPRD	04113
	Protein Interaction databases
DIP	O00585
IntAct	O00585
	Polymorphism : SNP, mutations, diseases
OMIM	602737    [ map ]
GENECLINICS	602737
SNP	CCL21 [dbSNP-NCBI]
SNP	NM_002989 [SNP-NCI]
SNP	CCL21 [GeneSNPs - Utah]  CCL21] [HGBASE - SRS]
HAPMAP	CCL21 [HAPMAP]
HGMD	CCL21
	General knowledge
Family Browser	CCL21 [UCSC Family Browser]
SOURCE	NM_002989
SMD	Hs.57907
SAGE	Hs.57907
GO	extracellular region [Amigo]  extracellular region
GO	extracellular space [Amigo]  extracellular space
GO	chemotaxis [Amigo]  chemotaxis
GO	inflammatory response [Amigo]  inflammatory response
GO	immune response [Amigo]  immune response
GO	immune response [Amigo]  immune response
GO	signal transduction [Amigo]  signal transduction
GO	cell-cell signaling [Amigo]  cell-cell signaling
GO	chemokine activity [Amigo]  chemokine activity
GO	chemokine activity [Amigo]  chemokine activity
KEGG	Cytokine-cytokine receptor interaction
PubGene	CCL21
TreeFam	CCL21
CTD	6366 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CCL21 Related clones (RZPD - Berlin)
	PubMed
PubMed	48 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Tue Oct 14 20:25:07 2008