CD27 (CD27 molecule)

Identity

Other names	MGC20393
	S152
	T14
	TNFRSF7
	Tp55
HGNC	CD27
Location	12p13
Location_base_pair	Starts at 6424312 and ends at 6431145 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	CD27   11922
Entrez_Gene	CD27  939  CD27 molecule
	Cards
GeneCards	CD27
Ensembl	CD27 [Search_View]   ENSG00000139193 [Gene_View]
Genatlas	CD27
GeneLynx	CD27
eGenome	CD27
euGene	939
	Genomic and cartography
GoldenPath	CD27  -  12p13   chr12:6424312-6431145 +  12p13.31   [Description]    (hg18-March_2006)
Ensembl	CD27 - 12p13.31 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CD27
	Gene and transcription
Genbank	AK315732 [ ENTREZ ]
Genbank	BC012160 [ ENTREZ ]
Genbank	BI225100 [ ENTREZ ]
Genbank	CR618820 [ ENTREZ ]
Genbank	DQ892296 [ ENTREZ ]
RefSeq	NM_001242 [ SRS ]    NM_001242 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	AC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_009759 [ SRS ]    NT_009759 [ ENTREZ ]
RefSeq	NW_001838050 [ SRS ]    NW_001838050 [ ENTREZ ]
RefSeq	NW_925295 [ SRS ]    NW_925295 [ ENTREZ ]
AceView	CD27 AceView - NCBI
Unigene	Hs.355307 [ SRS ]    Hs.355307 [ NCBI ]     HS355307 [ spliceNest ]
Fast-db	994 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P26842 [ SRS]    P26842 [ EXPASY ]     P26842 [ INTERPRO ]     P26842 [ UNIPROT ]
Prosite	PS00652 TNFR_NGFR_1 [ SRS ]    PS00652 TNFR_NGFR_1 [ Expasy ]
Prosite	PS50050 TNFR_NGFR_2 [ SRS ]    PS50050 TNFR_NGFR_2 [ Expasy ]
Interpro	IPR008063 Fas_rcpt [ SRS ]    IPR008063 Fas_rcpt [ EBI ]
Interpro	IPR001368 TNFR_c6 [ SRS ]    IPR001368 TNFR_c6 [ EBI ]
CluSTr	P26842
Pfam	PF00020 TNFR_c6 [ SRS ]    PF00020 TNFR_c6 [ Sanger ]    pfam00020 [ NCBI-CDD ]
Smart	SM00208 TNFR [EMBL]
Prodom	PD008931 TP2[INRA-Toulouse]
Prodom	P26842 CD27_HUMAN [ Domain structure ]   P26842 CD27_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P26842
HPRD	01723
	Protein Interaction databases
DIP	P26842
IntAct	P26842
	Polymorphism : SNP, mutations, diseases
OMIM	186711    [ map ]
GENECLINICS	186711
SNP	CD27 [dbSNP-NCBI]
SNP	NM_001242 [SNP-NCI]
SNP	CD27 [GeneSNPs - Utah]  CD27] [HGBASE - SRS]
HAPMAP	CD27 [HAPMAP]
COSMIC	CD27 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	CD27
	General knowledge
Family Browser	CD27 [UCSC Family Browser]
SOURCE	NM_001242
SMD	Hs.355307
SAGE	Hs.355307
GO	transmembrane receptor activity [Amigo]  transmembrane receptor activity
GO	protein binding [Amigo]  protein binding
GO	protein binding [Amigo]  protein binding
GO	extracellular region [Amigo]  extracellular region
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	apoptosis [Amigo]  apoptosis
GO	anti-apoptosis [Amigo]  anti-apoptosis
GO	anti-apoptosis [Amigo]  anti-apoptosis
GO	induction of apoptosis [Amigo]  induction of apoptosis
GO	immune response [Amigo]  immune response
GO	cell surface receptor linked signal transduction [Amigo]  cell surface receptor linked signal transduction
GO	release of cytoplasmic sequestered NF-kappaB [Amigo]  release of cytoplasmic sequestered NF-kappaB
GO	membrane [Amigo]  membrane
GO	immunoglobulin mediated immune response [Amigo]  immunoglobulin mediated immune response
GO	caspase inhibitor activity [Amigo]  caspase inhibitor activity
GO	positive regulation of B cell differentiation [Amigo]  positive regulation of B cell differentiation
GO	positive regulation of JNK cascade [Amigo]  positive regulation of JNK cascade
KEGG	Cytokine-cytokine receptor interaction
PubGene	CD27
TreeFam	CD27
CTD	939 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CD27 Related clones (RZPD - Berlin)
	PubMed
PubMed	50 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:34:17 2008