CD47 (CD47 molecule)

Identity

Other names	IAP
	MER6
	OA3
HGNC	CD47
Location	3q13.1-q13.2
Location_base_pair	Starts at 109244631 and ends at 109292625 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CD47   1682
Entrez_Gene	CD47  961  CD47 molecule
	Cards
GeneCards	CD47
Ensembl	CD47 [Search_View]   ENSG00000196776 [Gene_View]
Genatlas	CD47
GeneLynx	CD47
eGenome	CD47
euGene	961
	Genomic and cartography
GoldenPath	CD47  -     chr3:109244631-109292625 -  3q13.12   [Description]    (hg18-March_2006)
Ensembl	CD47 - 3q13.12 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CD47
	Gene and transcription
Genbank	AI701980 [ ENTREZ ]
Genbank	AK096670 [ ENTREZ ]
Genbank	AK124152 [ ENTREZ ]
Genbank	AK289813 [ ENTREZ ]
Genbank	AL832675 [ ENTREZ ]
RefSeq	NM_001025079 [ SRS ]    NM_001025079 [ ENTREZ ]
RefSeq	NM_001777 [ SRS ]    NM_001777 [ ENTREZ ]
RefSeq	NM_198793 [ SRS ]    NM_198793 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_005612 [ SRS ]    NT_005612 [ ENTREZ ]
RefSeq	NW_001838881 [ SRS ]    NW_001838881 [ ENTREZ ]
RefSeq	NW_921807 [ SRS ]    NW_921807 [ ENTREZ ]
AceView	CD47 AceView - NCBI
Unigene	Hs.446414 [ SRS ]    Hs.446414 [ NCBI ]     HS446414 [ spliceNest ]
Fast-db	10586 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q08722 [ SRS]    Q08722 [ EXPASY ]     Q08722 [ INTERPRO ]     Q08722 [ UNIPROT ]
Prosite	PS50835 IG_LIKE [ SRS ]    PS50835 IG_LIKE [ Expasy ]
Interpro	IPR006704 CD47 [ SRS ]    IPR006704 CD47 [ EBI ]
Interpro	IPR013147 CD47_TM [ SRS ]    IPR013147 CD47_TM [ EBI ]
Interpro	IPR013270 CD47_Vset [ SRS ]    IPR013270 CD47_Vset [ EBI ]
Interpro	IPR007110 Ig-like [ SRS ]    IPR007110 Ig-like [ EBI ]
CluSTr	Q08722
Pfam	PF04549 CD47 [ SRS ]    PF04549 CD47 [ Sanger ]    pfam04549 [ NCBI-CDD ]
Pfam	PF08204 V-set_CD47 [ SRS ]    PF08204 V-set_CD47 [ Sanger ]    pfam08204 [ NCBI-CDD ]
Blocks	Q08722
HPRD	03017
	Protein Interaction databases
DIP	Q08722
IntAct	Q08722
	Polymorphism : SNP, mutations, diseases
OMIM	601028    [ map ]
GENECLINICS	601028
SNP	CD47 [dbSNP-NCBI]
SNP	NM_001025079 [SNP-NCI]
SNP	NM_001777 [SNP-NCI]
SNP	NM_198793 [SNP-NCI]
SNP	CD47 [GeneSNPs - Utah]  CD47] [HGBASE - SRS]
HAPMAP	CD47 [HAPMAP]
HGMD	CD47
	General knowledge
Family Browser	CD47 [UCSC Family Browser]
SOURCE	NM_001025079
SOURCE	NM_001777
SOURCE	NM_198793
SMD	Hs.446414
SAGE	Hs.446414
GO	protein binding [Amigo]  protein binding
GO	plasma membrane [Amigo]  plasma membrane
GO	plasma membrane [Amigo]  plasma membrane
GO	integral to plasma membrane [Amigo]  integral to plasma membrane
GO	cell adhesion [Amigo]  cell adhesion
GO	integrin-mediated signaling pathway [Amigo]  integrin-mediated signaling pathway
GO	positive regulation of cell proliferation [Amigo]  positive regulation of cell proliferation
GO	positive regulation of cell-cell adhesion [Amigo]  positive regulation of cell-cell adhesion
GO	positive regulation of T cell activation [Amigo]  positive regulation of T cell activation
KEGG	ECM-receptor interaction
PubGene	CD47
TreeFam	CD47
CTD	961 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CD47 Related clones (RZPD - Berlin)
	PubMed
PubMed	60 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:06:47 2008