CDH20 (cadherin 20, type 2)

Identity

Other names	CDH7L3
	Cdh7
	FLJ37047
Hugo	CDH20
Location	18q22-q23
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
Hugo	CDH20
GDB	CDH20
Entrez_Gene	CDH20  28316  cadherin 20, type 2
	Cards
GeneCards	CDH20
Ensembl	CDH20 [Search_View]   ENSG00000101542 [Gene_View]
Genatlas	CDH20
GeneLynx	CDH20
eGenome	CDH20
euGene	28316
	Genomic and cartography
GoldenPath	CDH20  -     chr18:57308755-57373345 +  18q21.33   [Description]    (hg18-March_2006)
Ensembl	CDH20 - 18q21.33 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CDH20
	Gene and transcription
Genbank	AF217289 [ ENTREZ ]
Genbank	AK094366 [ ENTREZ ]
Genbank	AK290190 [ ENTREZ ]
Genbank	BC101047 [ ENTREZ ]
Genbank	BC101048 [ ENTREZ ]
RefSeq	NM_031891 [ SRS ]    NM_031891 [ ENTREZ ]
RefSeq	AC_000061 [ SRS ]    AC_000061 [ ENTREZ ]
RefSeq	NC_000018 [ SRS ]    NC_000018 [ ENTREZ ]
RefSeq	NT_025028 [ SRS ]    NT_025028 [ ENTREZ ]
RefSeq	NW_927106 [ SRS ]    NW_927106 [ ENTREZ ]
AceView	CDH20 AceView - NCBI
Unigene	Hs.671510 [ SRS ]    Hs.671510 [ NCBI ]     HS671510 [ spliceNest ]
Fast-db	5403 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q9HBT6 [ SRS]    Q9HBT6 [ EXPASY ]     Q9HBT6 [ INTERPRO ]
Prosite	PS00232 CADHERIN_1 [ SRS ]    PS00232 CADHERIN_1 [ Expasy ]
Prosite	PS50268 CADHERIN_2 [ SRS ]    PS50268 CADHERIN_2 [ Expasy ]
Interpro	IPR002126 Cadherin [ SRS ]    IPR002126 Cadherin [ EBI ]
Interpro	IPR000233 Cadherin_C_term [ SRS ]    IPR000233 Cadherin_C_term [ EBI ]
CluSTr	Q9HBT6
Pfam	PF00028 Cadherin [ SRS ]    PF00028 Cadherin [ Sanger ]    pfam00028 [ NCBI-CDD ]
Pfam	PF01049 Cadherin_C [ SRS ]    PF01049 Cadherin_C [ Sanger ]    pfam01049 [ NCBI-CDD ]
Smart	SM00112 CA [EMBL]
Blocks	Q9HBT6
HPRD	10429
	Protein Interaction databases
DIP	Q9HBT6
IntAct	Q9HBT6
	Polymorphism : SNP, mutations, diseases
OMIM	605807    [ map ]
GENECLINICS	605807
SNP	CDH20 [dbSNP-NCBI]
SNP	NM_031891 [SNP-NCI]
SNP	CDH20 [GeneSNPs - Utah]  CDH20] [HGBASE - SRS]
HAPMAP	CDH20 [HAPMAP]
HGMD	CDH20
	General knowledge
Family Browser	CDH20 [UCSC Family Browser]
SOURCE	NM_031891
SMD	Hs.671510
SAGE	Hs.671510
GO	calcium ion binding [Amigo]  calcium ion binding
GO	protein binding [Amigo]  protein binding
GO	plasma membrane [Amigo]  plasma membrane
GO	homophilic cell adhesion [Amigo]  homophilic cell adhesion
GO	integral to membrane [Amigo]  integral to membrane
PubGene	CDH20
TreeFam	CDH20
CTD	28316 [Comparative Genomics Database]
	Other databases
	Probes
Probe	CDH20 Related clones (RZPD - Berlin)
	PubMed
PubMed	3 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Thu May 22 20:00:23 2008