CDH6 (cadherin 6, type 2, K-cadherin (fetal kidney))

Identity

Other names	KCAD
HGNC	CDH6
Location	5p13.3
Location_base_pair	Starts at 31229553 and ends at 31360994 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CDH6   1765
Entrez_Gene	CDH6  1004  cadherin 6, type 2, K-cadherin (fetal kidney)
	Cards
GeneCards	CDH6
Ensembl	CDH6 [Search_View]   ENSG00000113361 [Gene_View]
Genatlas	CDH6
GeneLynx	CDH6
eGenome	CDH6
euGene	1004
	Genomic and cartography
GoldenPath	CDH6  -  5p13.3   chr5:31229553-31360994 +  5p13.3   [Description]    (hg18-March_2006)
Ensembl	CDH6 - 5p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CDH6
	Gene and transcription
Genbank	AK291290 [ ENTREZ ]
Genbank	AU130185 [ ENTREZ ]
Genbank	BC000019 [ ENTREZ ]
Genbank	D31784 [ ENTREZ ]
RefSeq	NM_004932 [ SRS ]    NM_004932 [ ENTREZ ]
RefSeq	AC_000048 [ SRS ]    AC_000048 [ ENTREZ ]
RefSeq	AC_000137 [ SRS ]    AC_000137 [ ENTREZ ]
RefSeq	NC_000005 [ SRS ]    NC_000005 [ ENTREZ ]
RefSeq	NT_006576 [ SRS ]    NT_006576 [ ENTREZ ]
RefSeq	NW_001838929 [ SRS ]    NW_001838929 [ ENTREZ ]
RefSeq	NW_922562 [ SRS ]    NW_922562 [ ENTREZ ]
AceView	CDH6 AceView - NCBI
Unigene	Hs.171054 [ SRS ]    Hs.171054 [ NCBI ]     HS171054 [ spliceNest ]
Fast-db	2011 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P55285 [ SRS]    P55285 [ EXPASY ]     P55285 [ INTERPRO ]     P55285 [ UNIPROT ]
Prosite	PS00232 CADHERIN_1 [ SRS ]    PS00232 CADHERIN_1 [ Expasy ]
Prosite	PS50268 CADHERIN_2 [ SRS ]    PS50268 CADHERIN_2 [ Expasy ]
Interpro	IPR002126 Cadherin [ SRS ]    IPR002126 Cadherin [ EBI ]
Interpro	IPR000233 Cadherin_C_term [ SRS ]    IPR000233 Cadherin_C_term [ EBI ]
CluSTr	P55285
Pfam	PF00028 Cadherin [ SRS ]    PF00028 Cadherin [ Sanger ]    pfam00028 [ NCBI-CDD ]
Pfam	PF01049 Cadherin_C [ SRS ]    PF01049 Cadherin_C [ Sanger ]    pfam01049 [ NCBI-CDD ]
Smart	SM00112 CA [EMBL]
Blocks	P55285
HPRD	04305
	Protein Interaction databases
DIP	P55285
IntAct	P55285
	Polymorphism : SNP, mutations, diseases
OMIM	603007    [ map ]
GENECLINICS	603007
SNP	CDH6 [dbSNP-NCBI]
SNP	NM_004932 [SNP-NCI]
SNP	CDH6 [GeneSNPs - Utah]  CDH6] [HGBASE - SRS]
HAPMAP	CDH6 [HAPMAP]
HGMD	CDH6
	General knowledge
Family Browser	CDH6 [UCSC Family Browser]
SOURCE	NM_004932
SMD	Hs.171054
SAGE	Hs.171054
GO	calcium ion binding [Amigo]  calcium ion binding
GO	protein binding [Amigo]  protein binding
GO	plasma membrane [Amigo]  plasma membrane
GO	cell adhesion [Amigo]  cell adhesion
GO	homophilic cell adhesion [Amigo]  homophilic cell adhesion
GO	female gonad development [Amigo]  female gonad development
GO	integral to membrane [Amigo]  integral to membrane
PubGene	CDH6
TreeFam	CDH6
CTD	1004 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CDH6 Related clones (RZPD - Berlin)
	PubMed
PubMed	14 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:34:49 2008