Atlas of Genetics and Cytogenetics in Oncology and Haematology

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CDH7 (cadherin 7, type 2)

Identity

Other namesCDH7L1
HGNC (Hugo) CDH7
Location 18q22.1
Location_base_pair Starts at 61569137 and ends at 61699154 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CDH7   1766
Entrez_Gene (NCBI)CDH7  1005  cadherin 7, type 2
Cards
GeneCards (Weizmann)CDH7
Ensembl (Hinxton)ENSG00000081138 [Gene_View]  CDH7 [Vega]
AceView (NCBI)CDH7
Genatlas (Paris)CDH7
euGene (Indiana)1005
SOURCE (Stanford)NM_004361 NM_033646
Gene Expression (Array Express) ENSG00000081138
Genomic and cartography
GoldenPath (UCSC)CDH7  -  18q22.1   chr18:61569137-61699154 +  18q22.1   [Description]    (hg18-March_2006)
EnsemblCDH7 - 18q22.1 [CytoView]
Mapping of homologs : NCBICDH7 [Mapview]
OMIM605806   
Gene and transcription
Gene : Genbank (Entrez)AB035301 AJ007611 BC036786
Reference sequence (RefSeq transcript) :SRSNM_004361 NM_033646
Reference transcript : EntrezNM_004361 NM_033646
RefSeq genomic : SRSAC_000061 AC_000150 NC_000018 NT_025028 NW_001838469 NW_927106
RefSeq genomic : EntrezAC_000061 AC_000150 NC_000018 NT_025028 NW_001838469 NW_927106
Consensus coding sequences : CCDS NCBICDH7
Cluster EST : UnigeneHs.657522 [ SRS ] Hs.657522 [ NCBI ]
Alternative Splicing : Fast-db (Paris)5735
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9ULB5 (SRS) Q9ULB5 (Expasy) Q9ULB5 (Uniprot)
With graphics : InterProQ9ULB5
Splice isoforms : VarSplice FASTAQ9ULB5(VarSplice FASTA)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domain pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom   
Related proteins : CluSTrQ9ULB5
Domain families : Pfam SRSCadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam SangerCadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam NCBIpfam00028    pfam01049   
Domain families : Smart EMBLCA (SM00112)  
Blocks (Seattle)Q9ULB5
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD12049
Protein Interaction databases
DIP (DOE-UCLA)Q9ULB5
IntAct (EBI)Q9ULB5
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICDH7
SNP : GeneSNP UtahCDH7
SNP : HGBaseCDH7
Genetic variants : HAPMAPCDH7
Somatic Mutations in Cancer : COSMICCDH7 
Mutations and Diseases : HGMDCDH7
Hereditary diseases : OMIM605806   
Hereditary diseases : GENETests605806   
Diseases : Genetic AssociationCDH7
General knowledge
Homologs : HomoloGeneCDH7
Homology/Alignments : Family Browser UCSCCDH7
Phylogenetic Trees/Animal Genes : TreeFamCDH7
Chemical/Protein Interactions : CTD1005
Keywords Ontology : AmiGOcalcium ion binding  protein binding  plasma membrane  homophilic cell adhesion  integral to membrane  
Keywords Ontology : EGO-EBIcalcium ion binding  protein binding  plasma membrane  homophilic cell adhesion  integral to membrane  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesCDH7 Related clones (RZPD - Berlin)
Literature
PubMed7 Pubmed reference(s) in Entrez
PubGeneCDH7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:39:05 CET 2010
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