CDK5RAP1 (CDK5 regulatory subunit associated protein 1)

Identity

Other names	C20orf34
	C42
	CDK5RAP1.3
	CDK5RAP1.4
	CGI-05
	HSPC167
HGNC	CDK5RAP1
Location	20pter-q11.23
Location_base_pair	Starts at 31410306 and ends at 31452998 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CDK5RAP1   15880
Entrez_Gene	CDK5RAP1  51654  CDK5 regulatory subunit associated protein 1
	Cards
GeneCards	CDK5RAP1
Ensembl	CDK5RAP1 [Search_View]   ENSG00000101391 [Gene_View]
Genatlas	CDK5RAP1
GeneLynx	CDK5RAP1
eGenome	CDK5RAP1
euGene	51654
	Genomic and cartography
GoldenPath	CDK5RAP1  -     chr20:31410306-31452998 -  20q11.21   [Description]    (hg18-March_2006)
Ensembl	CDK5RAP1 - 20q11.21 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CDK5RAP1
	Gene and transcription
Genbank	AF152097 [ ENTREZ ]
Genbank	AF161516 [ ENTREZ ]
Genbank	AK023992 [ ENTREZ ]
Genbank	AK027449 [ ENTREZ ]
Genbank	AK095644 [ ENTREZ ]
RefSeq	NM_016082 [ SRS ]    NM_016082 [ ENTREZ ]
RefSeq	NM_016408 [ SRS ]    NM_016408 [ ENTREZ ]
RefSeq	AC_000063 [ SRS ]    AC_000063 [ ENTREZ ]
RefSeq	AC_000152 [ SRS ]    AC_000152 [ ENTREZ ]
RefSeq	NC_000020 [ SRS ]    NC_000020 [ ENTREZ ]
RefSeq	NT_028392 [ SRS ]    NT_028392 [ ENTREZ ]
RefSeq	NW_001838664 [ SRS ]    NW_001838664 [ ENTREZ ]
RefSeq	NW_927339 [ SRS ]    NW_927339 [ ENTREZ ]
AceView	CDK5RAP1 AceView - NCBI
Unigene	Hs.435952 [ SRS ]    Hs.435952 [ NCBI ]     HS435952 [ spliceNest ]
Fast-db	8273 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q53H36 [ SRS]    Q53H36 [ EXPASY ]     Q53H36 [ INTERPRO ]     Q53H36 [ UNIPROT ]
Prosite	PS50926 TRAM [ SRS ]    PS50926 TRAM [ Expasy ]
Prosite	PS01278 UPF0004 [ SRS ]    PS01278 UPF0004 [ Expasy ]
Interpro	IPR006638 Elp3/MiaB/NifB [ SRS ]    IPR006638 Elp3/MiaB/NifB [ EBI ]
Interpro	IPR006463 MiaB_methiolase [ SRS ]    IPR006463 MiaB_methiolase [ EBI ]
Interpro	IPR007197 Radical_SAM [ SRS ]    IPR007197 Radical_SAM [ EBI ]
Interpro	IPR002792 TRAM [ SRS ]    IPR002792 TRAM [ EBI ]
Interpro	IPR005839 UPF0004 [ SRS ]    IPR005839 UPF0004 [ EBI ]
Interpro	IPR013848 UPF0004_N [ SRS ]    IPR013848 UPF0004_N [ EBI ]
CluSTr	Q53H36
Pfam	PF04055 Radical_SAM [ SRS ]    PF04055 Radical_SAM [ Sanger ]    pfam04055 [ NCBI-CDD ]
Pfam	PF01938 TRAM [ SRS ]    PF01938 TRAM [ Sanger ]    pfam01938 [ NCBI-CDD ]
Pfam	PF00919 UPF0004 [ SRS ]    PF00919 UPF0004 [ Sanger ]    pfam00919 [ NCBI-CDD ]
Smart	SM00729 Elp3 [EMBL]
Blocks	Q53H36
HPRD	12189
	Protein Interaction databases
DIP	Q53H36
IntAct	Q53H36
	Polymorphism : SNP, mutations, diseases
OMIM	608200    [ map ]
GENECLINICS	608200
SNP	CDK5RAP1 [dbSNP-NCBI]
SNP	NM_016082 [SNP-NCI]
SNP	NM_016408 [SNP-NCI]
SNP	CDK5RAP1 [GeneSNPs - Utah]  CDK5RAP1] [HGBASE - SRS]
HAPMAP	CDK5RAP1 [HAPMAP]
COSMIC	CDK5RAP1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	CDK5RAP1
	General knowledge
Family Browser	CDK5RAP1 [UCSC Family Browser]
SOURCE	NM_016082
SOURCE	NM_016408
SMD	Hs.435952
SAGE	Hs.435952
GO	catalytic activity [Amigo]  catalytic activity
GO	iron ion binding [Amigo]  iron ion binding
GO	protein binding [Amigo]  protein binding
GO	cellular_component [Amigo]  cellular_component
GO	brain development [Amigo]  brain development
GO	neuronal Cdc2-like kinase binding [Amigo]  neuronal Cdc2-like kinase binding
GO	regulation of neuron differentiation [Amigo]  regulation of neuron differentiation
GO	negative regulation of cyclin-dependent protein kinase activity [Amigo]  negative regulation of cyclin-dependent protein kinase activity
GO	metal ion binding [Amigo]  metal ion binding
GO	4 iron, 4 sulfur cluster binding [Amigo]  4 iron, 4 sulfur cluster binding
PubGene	CDK5RAP1
TreeFam	CDK5RAP1
CTD	51654 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CDK5RAP1 Related clones (RZPD - Berlin)
	PubMed
PubMed	14 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Tue Oct 14 20:26:10 2008