CHD4 (chromodomain helicase DNA binding protein 4)

Identity

Other names	DKFZp686E06161
	Mi-2b
	Mi2-BETA
HGNC	CHD4
Location	12p13
Location_base_pair	Starts at 6549509 and ends at 6586812 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CHD4   1919
Entrez_Gene	CHD4  1108  chromodomain helicase DNA binding protein 4
	Cards
GeneCards	CHD4
Ensembl	CHD4 [Search_View]   ENSG00000111642 [Gene_View]
Genatlas	CHD4
GeneLynx	CHD4
eGenome	CHD4
euGene	1108
	Genomic and cartography
GoldenPath	CHD4  -  12p13   chr12:6549509-6586812 -  12p13.31   [Description]    (hg18-March_2006)
Ensembl	CHD4 - 12p13.31 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CHD4
	Gene and transcription
Genbank	AK128741 [ ENTREZ ]
Genbank	BC014964 [ ENTREZ ]
Genbank	BC025962 [ ENTREZ ]
Genbank	BC038596 [ ENTREZ ]
Genbank	CR590459 [ ENTREZ ]
RefSeq	NM_001273 [ SRS ]    NM_001273 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	AC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_009759 [ SRS ]    NT_009759 [ ENTREZ ]
RefSeq	NW_001838050 [ SRS ]    NW_001838050 [ ENTREZ ]
RefSeq	NW_925295 [ SRS ]    NW_925295 [ ENTREZ ]
AceView	CHD4 AceView - NCBI
Unigene	Hs.162233 [ SRS ]    Hs.162233 [ NCBI ]     HS162233 [ spliceNest ]
Fast-db	1185 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q05CG6 [ SRS]    Q05CG6 [ EXPASY ]     Q05CG6 [ INTERPRO ]     Q05CG6 [ UNIPROT ]
Interpro	IPR012958 CHD_N [ SRS ]    IPR012958 CHD_N [ EBI ]
CluSTr	Q05CG6
Pfam	PF08073 CHDNT [ SRS ]    PF08073 CHDNT [ Sanger ]    pfam08073 [ NCBI-CDD ]
Blocks	Q05CG6
HPRD	04472
	Protein Interaction databases
DIP	Q05CG6
IntAct	Q05CG6
	Polymorphism : SNP, mutations, diseases
OMIM	603277    [ map ]
GENECLINICS	603277
SNP	CHD4 [dbSNP-NCBI]
SNP	NM_001273 [SNP-NCI]
SNP	CHD4 [GeneSNPs - Utah]  CHD4] [HGBASE - SRS]
HAPMAP	CHD4 [HAPMAP]
COSMIC	CHD4 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	CHD4
	General knowledge
Family Browser	CHD4 [UCSC Family Browser]
SOURCE	NM_001273
SMD	Hs.162233
SAGE	Hs.162233
GO	nucleotide binding [Amigo]  nucleotide binding
GO	chromatin [Amigo]  chromatin
GO	DNA binding [Amigo]  DNA binding
GO	chromatin binding [Amigo]  chromatin binding
GO	ATP-dependent DNA helicase activity [Amigo]  ATP-dependent DNA helicase activity
GO	ATP binding [Amigo]  ATP binding
GO	nucleus [Amigo]  nucleus
GO	chromatin assembly or disassembly [Amigo]  chromatin assembly or disassembly
GO	regulation of transcription from RNA polymerase II promoter [Amigo]  regulation of transcription from RNA polymerase II promoter
GO	transcription factor binding [Amigo]  transcription factor binding
GO	zinc ion binding [Amigo]  zinc ion binding
GO	chromatin modification [Amigo]  chromatin modification
GO	hydrolase activity [Amigo]  hydrolase activity
GO	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Amigo]  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO	metal ion binding [Amigo]  metal ion binding
PubGene	CHD4
TreeFam	CHD4
CTD	1108 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CHD4 Related clones (RZPD - Berlin)
	PubMed
PubMed	31 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:07:38 2008