CHL1 (cell adhesion molecule with homology to L1CAM (close homolog of L1))

Identity

Other names	CALL
	FLJ44930
	L1CAM2
	MGC132578
HGNC	CHL1
Location	3p26
Location_base_pair	Starts at 213650 and ends at 426097 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CHL1   1939
Entrez_Gene	CHL1  10752  cell adhesion molecule with homology to L1CAM (close homolog of L1)
	Cards
GeneCards	CHL1
Ensembl	CHL1 [Search_View]   ENSG00000134121 [Gene_View]
Genatlas	CHL1
GeneLynx	CHL1
eGenome	CHL1
euGene	10752
	Genomic and cartography
GoldenPath	CHL1  -  3p26   chr3:213650-426097 +  3p26.3   [Description]    (hg18-March_2006)
Ensembl	CHL1 - 3p26.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CHL1
	Gene and transcription
Genbank	AB209329 [ ENTREZ ]
Genbank	AF002246 [ ENTREZ ]
Genbank	AK126878 [ ENTREZ ]
Genbank	BC104918 [ ENTREZ ]
Genbank	BF056756 [ ENTREZ ]
RefSeq	NM_006614 [ SRS ]    NM_006614 [ ENTREZ ]
RefSeq	AC_000046 [ SRS ]    AC_000046 [ ENTREZ ]
RefSeq	AC_000135 [ SRS ]    AC_000135 [ ENTREZ ]
RefSeq	NC_000003 [ SRS ]    NC_000003 [ ENTREZ ]
RefSeq	NT_022517 [ SRS ]    NT_022517 [ ENTREZ ]
RefSeq	NW_001838876 [ SRS ]    NW_001838876 [ ENTREZ ]
RefSeq	NW_921651 [ SRS ]    NW_921651 [ ENTREZ ]
AceView	CHL1 AceView - NCBI
Unigene	Hs.148909 [ SRS ]    Hs.148909 [ NCBI ]     HS148909 [ spliceNest ]
Fast-db	569 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O00533 [ SRS]    O00533 [ EXPASY ]     O00533 [ INTERPRO ]     O00533 [ UNIPROT ]
Prosite	PS50853 FN3 [ SRS ]    PS50853 FN3 [ Expasy ]
Prosite	PS50835 IG_LIKE [ SRS ]    PS50835 IG_LIKE [ Expasy ]
Interpro	IPR008957 Fibronectin_typ-III-like_fold [ SRS ]    IPR008957 Fibronectin_typ-III-like_fold [ EBI ]
Interpro	IPR003961 FN_III [ SRS ]    IPR003961 FN_III [ EBI ]
Interpro	IPR013151 Ig [ SRS ]    IPR013151 Ig [ EBI ]
Interpro	IPR007110 Ig-like [ SRS ]    IPR007110 Ig-like [ EBI ]
Interpro	IPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
Interpro	IPR013098 Ig_I-set [ SRS ]    IPR013098 Ig_I-set [ EBI ]
Interpro	IPR003599 Ig_sub [ SRS ]    IPR003599 Ig_sub [ EBI ]
Interpro	IPR003598 Ig_sub2 [ SRS ]    IPR003598 Ig_sub2 [ EBI ]
Interpro	IPR013106 Ig_V-set [ SRS ]    IPR013106 Ig_V-set [ EBI ]
CluSTr	O00533
Pfam	PF00041 fn3 [ SRS ]    PF00041 fn3 [ Sanger ]    pfam00041 [ NCBI-CDD ]
Pfam	PF07679 I-set [ SRS ]    PF07679 I-set [ Sanger ]    pfam07679 [ NCBI-CDD ]
Pfam	PF00047 ig [ SRS ]    PF00047 ig [ Sanger ]    pfam00047 [ NCBI-CDD ]
Pfam	PF07686 V-set [ SRS ]    PF07686 V-set [ Sanger ]    pfam07686 [ NCBI-CDD ]
Smart	SM00060 FN3 [EMBL]
Smart	SM00409 IG [EMBL]
Smart	SM00408 IGc2 [EMBL]
Blocks	O00533
HPRD	07598
	Protein Interaction databases
DIP	O00533
IntAct	O00533
	Polymorphism : SNP, mutations, diseases
OMIM	607416    [ map ]
GENECLINICS	607416
SNP	CHL1 [dbSNP-NCBI]
SNP	NM_006614 [SNP-NCI]
SNP	CHL1 [GeneSNPs - Utah]  CHL1] [HGBASE - SRS]
HAPMAP	CHL1 [HAPMAP]
HGMD	CHL1
	General knowledge
Family Browser	CHL1 [UCSC Family Browser]
SOURCE	NM_006614
SMD	Hs.148909
SAGE	Hs.148909
GO	neuron migration [Amigo]  neuron migration
GO	protein binding [Amigo]  protein binding
GO	extracellular region [Amigo]  extracellular region
GO	proteinaceous extracellular matrix [Amigo]  proteinaceous extracellular matrix
GO	plasma membrane [Amigo]  plasma membrane
GO	cell adhesion [Amigo]  cell adhesion
GO	signal transduction [Amigo]  signal transduction
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	nervous system development [Amigo]  nervous system development
GO	axon guidance [Amigo]  axon guidance
GO	behavior [Amigo]  behavior
GO	integral to membrane [Amigo]  integral to membrane
GO	cell differentiation [Amigo]  cell differentiation
GO	dendrite [Amigo]  dendrite
GO	neurite development [Amigo]  neurite development
GO	apical part of cell [Amigo]  apical part of cell
PubGene	CHL1
TreeFam	CHL1
CTD	10752 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CHL1 Related clones (RZPD - Berlin)
	PubMed
PubMed	10 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:35:24 2008