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CIDEA (cell death-inducing DFFA-like effector a)

Identity

Other namesCIDE-A
HGNC (Hugo) CIDEA
Location 18p11.21
Location_base_pair Starts at 12244318 and ends at 12267594 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)CIDEA   1976
Entrez_Gene (NCBI)CIDEA  1149  cell death-inducing DFFA-like effector a
Cards
GeneCards (Weizmann)CIDEA
Ensembl (Hinxton)ENSG00000176194 [Gene_View]  CIDEA [Vega]
AceView (NCBI)CIDEA
Genatlas (Paris)CIDEA
euGene (Indiana)1149
SOURCE (Stanford)NM_001279 NM_198289
Gene Expression (Array Express) ENSG00000176194
Genomic and cartography
GoldenPath (UCSC)CIDEA  -  18p11.21   chr18:12244318-12267594 +  18p11.21   [Description]    (hg18-March_2006)
EnsemblCIDEA - 18p11.21 [CytoView]
Mapping of homologs : NCBICIDEA [Mapview]
OMIM604440   
Gene and transcription
Gene : Genbank (Entrez)AA683375 AF041378 AK122762 AY364639 BC031896
Reference sequence (RefSeq transcript) :SRSNM_001279 NM_198289
Reference transcript : EntrezNM_001279 NM_198289
RefSeq genomic : SRSAC_000061 AC_000150 NC_000018 NT_010859 NW_001838464 NW_926940
RefSeq genomic : EntrezAC_000061 AC_000150 NC_000018 NT_010859 NW_001838464 NW_926940
Consensus coding sequences : CCDS NCBICIDEA
Cluster EST : UnigeneHs.249129 [ SRS ] Hs.249129 [ NCBI ]
Alternative Splicing : Fast-db (Paris)1535
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO60543 (SRS) O60543 (Expasy) O60543 (Uniprot)
With graphics : InterProO60543
Splice isoforms : VarSplice FASTAO60543(VarSplice FASTA)
Domaine pattern : Prosite (SRS)CIDE_N (PS51135)   
Domain pattern : Prosite (Expaxy)CIDE_N (PS51135)   
Domains : Interpro (SRS)CAD   
Domains : Interpro (EBI)CAD   
Related proteins : CluSTrO60543
Domain families : Pfam SRSCIDE-N (PF02017)   
Domain families : Pfam SangerCIDE-N (PF02017)   
Domain families : Pfam NCBIpfam02017   
Domain families : Smart EMBLCAD (SM00266)  
Blocks (Seattle)O60543
Crystal structure of protein : PDB SRS2EEL   
Crystal structure of protein : PDBSum2EEL   
Crystal structure of protein : IMB2EEL   
Crystal structure of protein : PDB RSDB2EEL   
HPRD08380
Protein Interaction databases
DIP (DOE-UCLA)O60543
IntAct (EBI)O60543
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBICIDEA
SNP : GeneSNP UtahCIDEA
SNP : HGBaseCIDEA
Genetic variants : HAPMAPCIDEA
Somatic Mutations in Cancer : COSMICCIDEA 
Mutations and Diseases : HGMDCIDEA
Hereditary diseases : OMIM604440   
Hereditary diseases : GENETests604440   
Diseases : Genetic AssociationCIDEA
General knowledge
Homologs : HomoloGeneCIDEA
Homology/Alignments : Family Browser UCSCCIDEA
Phylogenetic Trees/Animal Genes : TreeFamCIDEA
Chemical/Protein Interactions : CTD1149
Keywords Ontology : AmiGOtemperature homeostasis  protein binding  intracellular  nucleus  cytoplasm  mitochondrion  mitochondrial envelope  lipid particle  DNA fragmentation involved in apoptosis  lipid metabolic process  cell death  DNA damage response, signal transduction resulting in induction of apoptosis  positive regulation of sequestering of triglyceride  lipid storage  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of tumor necrosis factor production  protein homodimerization activity  negative regulation of apoptosis  negative regulation of cytokine secretion  negative regulation of lipid catabolic process  negative regulation of lipid catabolic process  
Keywords Ontology : EGO-EBItemperature homeostasis  protein binding  intracellular  nucleus  cytoplasm  mitochondrion  mitochondrial envelope  lipid particle  DNA fragmentation involved in apoptosis  lipid metabolic process  cell death  DNA damage response, signal transduction resulting in induction of apoptosis  positive regulation of sequestering of triglyceride  lipid storage  negative regulation of transforming growth factor beta receptor signaling pathway  negative regulation of tumor necrosis factor production  protein homodimerization activity  negative regulation of apoptosis  negative regulation of cytokine secretion  negative regulation of lipid catabolic process  negative regulation of lipid catabolic process  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesCIDEA Related clones (RZPD - Berlin)
Literature
PubMed15 Pubmed reference(s) in Entrez
PubGeneCIDEA
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:29:33 CET 2010
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