CIRBP (cold inducible RNA binding protein)

Identity

Other names	CIRP
HGNC	CIRBP
Location	19p13.3
Location_base_pair	Starts at 1220267 and ends at 1224171 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CIRBP   1982
Entrez_Gene	CIRBP  1153  cold inducible RNA binding protein
	Cards
GeneCards	CIRBP
Ensembl	CIRBP [Search_View]   ENSG00000099622 [Gene_View]
Genatlas	CIRBP
GeneLynx	CIRBP
eGenome	CIRBP
euGene	1153
	Genomic and cartography
GoldenPath	CIRBP  -  19p13.3   chr19:1220267-1224171 +  19p13.3   [Description]    (hg18-March_2006)
Ensembl	CIRBP - 19p13.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CIRBP
	Gene and transcription
Genbank	AF021336 [ ENTREZ ]
Genbank	AK094781 [ ENTREZ ]
Genbank	AK095781 [ ENTREZ ]
Genbank	AK128423 [ ENTREZ ]
Genbank	AK311601 [ ENTREZ ]
RefSeq	NM_001280 [ SRS ]    NM_001280 [ ENTREZ ]
RefSeq	AC_000062 [ SRS ]    AC_000062 [ ENTREZ ]
RefSeq	AC_000151 [ SRS ]    AC_000151 [ ENTREZ ]
RefSeq	NC_000019 [ SRS ]    NC_000019 [ ENTREZ ]
RefSeq	NT_011255 [ SRS ]    NT_011255 [ ENTREZ ]
RefSeq	NW_001838476 [ SRS ]    NW_001838476 [ ENTREZ ]
RefSeq	NW_927173 [ SRS ]    NW_927173 [ ENTREZ ]
AceView	CIRBP AceView - NCBI
Unigene	Hs.664127 [ SRS ]    Hs.664127 [ NCBI ]     HS664127 [ spliceNest ]
Fast-db	1058 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q14011 [ SRS]    Q14011 [ EXPASY ]     Q14011 [ INTERPRO ]     Q14011 [ UNIPROT ]
Prosite	PS50102 RRM [ SRS ]    PS50102 RRM [ Expasy ]
Interpro	IPR012677 a_b_plait_nuc_bd [ SRS ]    IPR012677 a_b_plait_nuc_bd [ EBI ]
Interpro	IPR000504 RRM_RNP1 [ SRS ]    IPR000504 RRM_RNP1 [ EBI ]
CluSTr	Q14011
Pfam	PF00076 RRM_1 [ SRS ]    PF00076 RRM_1 [ Sanger ]    pfam00076 [ NCBI-CDD ]
Smart	SM00360 RRM [EMBL]
Blocks	Q14011
PDB	1X5S [ SRS ]    1X5S [ PdbSum ],   1X5S [ IMB ]   1X5S [ RSDB ]
HPRD	08375
	Protein Interaction databases
DIP	Q14011
IntAct	Q14011
	Polymorphism : SNP, mutations, diseases
OMIM	602649    [ map ]
GENECLINICS	602649
SNP	CIRBP [dbSNP-NCBI]
SNP	NM_001280 [SNP-NCI]
SNP	CIRBP [GeneSNPs - Utah]  CIRBP] [HGBASE - SRS]
HAPMAP	CIRBP [HAPMAP]
COSMIC	CIRBP [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	CIRBP
	General knowledge
Family Browser	CIRBP [UCSC Family Browser]
SOURCE	NM_001280
SMD	Hs.664127
SAGE	Hs.664127
GO	nucleotide binding [Amigo]  nucleotide binding
GO	nucleic acid binding [Amigo]  nucleic acid binding
GO	RNA binding [Amigo]  RNA binding
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	response to cold [Amigo]  response to cold
PubGene	CIRBP
TreeFam	CIRBP
CTD	1153 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CIRBP Related clones (RZPD - Berlin)
	PubMed
PubMed	15 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:35:35 2008