CLCN6 (chloride channel 6)

Identity

Other names	CLC-6
	KIAA0046
HGNC	CLCN6
Location	1p36
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CLCN6   2024
Entrez_Gene	CLCN6  1185  chloride channel 6
	Cards
GeneCards	CLCN6
Ensembl	CLCN6 [Search_View]   ENSG00000011021 [Gene_View]
Genatlas	CLCN6
GeneLynx	CLCN6
eGenome	CLCN6
euGene	1185
	Genomic and cartography
GoldenPath	CLCN6  -  1p36   chr1:11788794-11825788 +  1p36.22   [Description]    (hg18-March_2006)
Ensembl	CLCN6 - 1p36.22 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CLCN6
	Gene and transcription
Genbank	AK289999 [ ENTREZ ]
Genbank	AK307098 [ ENTREZ ]
Genbank	BC050457 [ ENTREZ ]
Genbank	BC117420 [ ENTREZ ]
Genbank	BC117424 [ ENTREZ ]
RefSeq	NM_001286 [ SRS ]    NM_001286 [ ENTREZ ]
RefSeq	NM_021735 [ SRS ]    NM_021735 [ ENTREZ ]
RefSeq	NM_021736 [ SRS ]    NM_021736 [ ENTREZ ]
RefSeq	NM_021737 [ SRS ]    NM_021737 [ ENTREZ ]
RefSeq	AC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeq	AC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeq	NC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeq	NT_021937 [ SRS ]    NT_021937 [ ENTREZ ]
RefSeq	NW_001838534 [ SRS ]    NW_001838534 [ ENTREZ ]
RefSeq	NW_923572 [ SRS ]    NW_923572 [ ENTREZ ]
AceView	CLCN6 AceView - NCBI
Unigene	Hs.193043 [ SRS ]    Hs.193043 [ NCBI ]     HS193043 [ spliceNest ]
Fast-db	5699 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P51797 [ SRS]    P51797 [ EXPASY ]     P51797 [ INTERPRO ]     P51797 [ UNIPROT ]
Prosite	PS51371 CBS [ SRS ]    PS51371 CBS [ Expasy ]
Interpro	IPR014743 Cl-channel_core [ SRS ]    IPR014743 Cl-channel_core [ EBI ]
Interpro	IPR001807 Cl-channel_volt [ SRS ]    IPR001807 Cl-channel_volt [ EBI ]
Interpro	IPR002248 Cl_channel6 [ SRS ]    IPR002248 Cl_channel6 [ EBI ]
Interpro	IPR000644 Cysta_beta_synth_core [ SRS ]    IPR000644 Cysta_beta_synth_core [ EBI ]
CluSTr	P51797
Pfam	PF00571 CBS [ SRS ]    PF00571 CBS [ Sanger ]    pfam00571 [ NCBI-CDD ]
Pfam	PF00654 Voltage_CLC [ SRS ]    PF00654 Voltage_CLC [ Sanger ]    pfam00654 [ NCBI-CDD ]
Smart	SM00116 CBS [EMBL]
Blocks	P51797
HPRD	04102
	Protein Interaction databases
DIP	P51797
IntAct	P51797
	Polymorphism : SNP, mutations, diseases
OMIM	602726    [ map ]
GENECLINICS	602726
SNP	CLCN6 [dbSNP-NCBI]
SNP	NM_001286 [SNP-NCI]
SNP	NM_021735 [SNP-NCI]
SNP	NM_021736 [SNP-NCI]
SNP	NM_021737 [SNP-NCI]
SNP	CLCN6 [GeneSNPs - Utah]  CLCN6] [HGBASE - SRS]
HAPMAP	CLCN6 [HAPMAP]
HGMD	CLCN6
	General knowledge
Family Browser	CLCN6 [UCSC Family Browser]
SOURCE	NM_001286
SOURCE	NM_021735
SOURCE	NM_021736
SOURCE	NM_021737
SMD	Hs.193043
SAGE	Hs.193043
GO	voltage-gated ion channel activity [Amigo]  voltage-gated ion channel activity
GO	voltage-gated chloride channel activity [Amigo]  voltage-gated chloride channel activity
GO	voltage-gated chloride channel activity [Amigo]  voltage-gated chloride channel activity
GO	ion transport [Amigo]  ion transport
GO	chloride transport [Amigo]  chloride transport
GO	chloride transport [Amigo]  chloride transport
GO	cell volume homeostasis [Amigo]  cell volume homeostasis
GO	signal transduction [Amigo]  signal transduction
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	chloride ion binding [Amigo]  chloride ion binding
PubGene	CLCN6
TreeFam	CLCN6
CTD	1185 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CLCN6 Related clones (RZPD - Berlin)
	PubMed
PubMed	13 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:05:17 2008