CLDN5 (claudin 5)

Identity

Other names	AWAL
	BEC1
	CPETRL1
	TMVCF
HGNC	CLDN5
Location	22q11.21
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	CLDN5   2047
Entrez_Gene	CLDN5  7122  claudin 5
	Cards
GeneCards	CLDN5
Ensembl	CLDN5 [Search_View]   ENSG00000184113 [Gene_View]
Genatlas	CLDN5
GeneLynx	CLDN5
eGenome	CLDN5
euGene	7122
	Genomic and cartography
GoldenPath	CLDN5  -  22q11.21   chr22:17890550-17892860 -  22q11.21   [Description]    (hg18-March_2006)
Ensembl	CLDN5 - 22q11.21 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CLDN5
	Gene and transcription
Genbank	AF000959 [ ENTREZ ]
Genbank	AK092561 [ ENTREZ ]
Genbank	AK124019 [ ENTREZ ]
Genbank	AK222466 [ ENTREZ ]
Genbank	BC002404 [ ENTREZ ]
RefSeq	NM_003277 [ SRS ]    NM_003277 [ ENTREZ ]
RefSeq	AC_000065 [ SRS ]    AC_000065 [ ENTREZ ]
RefSeq	AC_000154 [ SRS ]    AC_000154 [ ENTREZ ]
RefSeq	NC_000022 [ SRS ]    NC_000022 [ ENTREZ ]
RefSeq	NT_011519 [ SRS ]    NT_011519 [ ENTREZ ]
RefSeq	NW_001838737 [ SRS ]    NW_001838737 [ ENTREZ ]
RefSeq	NW_927495 [ SRS ]    NW_927495 [ ENTREZ ]
AceView	CLDN5 AceView - NCBI
Unigene	Hs.505337 [ SRS ]    Hs.505337 [ NCBI ]     HS505337 [ spliceNest ]
Fast-db	1292 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O00501 [ SRS]    O00501 [ EXPASY ]     O00501 [ INTERPRO ]     O00501 [ UNIPROT ]
Prosite	PS01346 CLAUDIN [ SRS ]    PS01346 CLAUDIN [ Expasy ]
Interpro	IPR006187 Claudin [ SRS ]    IPR006187 Claudin [ EBI ]
Interpro	IPR003551 Claudin5 [ SRS ]    IPR003551 Claudin5 [ EBI ]
Interpro	IPR004031 PMP22/EMP/MP20/Claudin [ SRS ]    IPR004031 PMP22/EMP/MP20/Claudin [ EBI ]
CluSTr	O00501
Pfam	PF00822 PMP22_Claudin [ SRS ]    PF00822 PMP22_Claudin [ Sanger ]    pfam00822 [ NCBI-CDD ]
Blocks	O00501
HPRD	03654
	Protein Interaction databases
DIP	O00501
IntAct	O00501
	Polymorphism : SNP, mutations, diseases
OMIM	602101    [ map ]
GENECLINICS	602101
SNP	CLDN5 [dbSNP-NCBI]
SNP	NM_003277 [SNP-NCI]
SNP	CLDN5 [GeneSNPs - Utah]  CLDN5] [HGBASE - SRS]
HAPMAP	CLDN5 [HAPMAP]
HGMD	CLDN5
	General knowledge
Family Browser	CLDN5 [UCSC Family Browser]
SOURCE	NM_003277
SMD	Hs.505337
SAGE	Hs.505337
GO	structural molecule activity [Amigo]  structural molecule activity
GO	plasma membrane [Amigo]  plasma membrane
GO	tight junction [Amigo]  tight junction
GO	tight junction [Amigo]  tight junction
GO	membrane [Amigo]  membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	integral to membrane [Amigo]  integral to membrane
GO	calcium-independent cell-cell adhesion [Amigo]  calcium-independent cell-cell adhesion
GO	cell junction [Amigo]  cell junction
GO	identical protein binding [Amigo]  identical protein binding
KEGG	Cell adhesion molecules (CAMs)
KEGG	Tight junction
KEGG	Leukocyte transendothelial migration
PubGene	CLDN5
TreeFam	CLDN5
CTD	7122 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CLDN5 Related clones (RZPD - Berlin)
	PubMed
PubMed	35 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:05:20 2008