COPS5 (COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis))

Identity

Other names	CSN5
	JAB1
	MGC3149
	MOV-34
	SGN5
HGNC	COPS5
Location	8q13.2
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	COPS5   2240
Entrez_Gene	COPS5  10987  COP9 constitutive photomorphogenic homolog subunit 5 (Arabidopsis)
	Cards
GeneCards	COPS5
Ensembl	COPS5 [Search_View]   ENSG00000121022 [Gene_View]
Genatlas	COPS5
GeneLynx	COPS5
eGenome	COPS5
euGene	10987
	Genomic and cartography
GoldenPath	COPS5  -  8q13.2   chr8:68117869-68137116 -  8q13.2   [Description]    (hg18-March_2006)
Ensembl	COPS5 - 8q13.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	COPS5
	Gene and transcription
Genbank	AA203444 [ ENTREZ ]
Genbank	AB209134 [ ENTREZ ]
Genbank	AK056967 [ ENTREZ ]
Genbank	AK128519 [ ENTREZ ]
Genbank	AK310434 [ ENTREZ ]
RefSeq	NM_006837 [ SRS ]    NM_006837 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_008183 [ SRS ]    NT_008183 [ ENTREZ ]
RefSeq	NW_001839132 [ SRS ]    NW_001839132 [ ENTREZ ]
RefSeq	NW_923929 [ SRS ]    NW_923929 [ ENTREZ ]
AceView	COPS5 AceView - NCBI
Unigene	Hs.491912 [ SRS ]    Hs.491912 [ NCBI ]     HS491912 [ spliceNest ]
Fast-db	5684 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q59GH5 [ SRS]    Q59GH5 [ EXPASY ]     Q59GH5 [ INTERPRO ]     Q59GH5 [ UNIPROT ]
Interpro	IPR003639 Mov34-1 [ SRS ]    IPR003639 Mov34-1 [ EBI ]
Interpro	IPR000555 Mov34_MPN_PAD1 [ SRS ]    IPR000555 Mov34_MPN_PAD1 [ EBI ]
CluSTr	Q59GH5
Pfam	PF01398 Mov34 [ SRS ]    PF01398 Mov34 [ Sanger ]    pfam01398 [ NCBI-CDD ]
Smart	SM00232 JAB_MPN [EMBL]
Prodom	PD363422 Mov34-1[INRA-Toulouse]
Prodom	Q59GH5 Q59GH5_HUMAN [ Domain structure ]   Q59GH5 Q59GH5_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q59GH5
HPRD	06888
	Protein Interaction databases
DIP	Q59GH5
IntAct	Q59GH5
	Polymorphism : SNP, mutations, diseases
OMIM	604850    [ map ]
GENECLINICS	604850
SNP	COPS5 [dbSNP-NCBI]
SNP	NM_006837 [SNP-NCI]
SNP	COPS5 [GeneSNPs - Utah]  COPS5] [HGBASE - SRS]
HAPMAP	COPS5 [HAPMAP]
COSMIC	COPS5 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	COPS5
	General knowledge
Family Browser	COPS5 [UCSC Family Browser]
SOURCE	NM_006837
SMD	Hs.491912
SAGE	Hs.491912
GO	transcription coactivator activity [Amigo]  transcription coactivator activity
GO	translation initiation factor activity [Amigo]  translation initiation factor activity
GO	protein binding [Amigo]  protein binding
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	eukaryotic translation initiation factor 3 complex [Amigo]  eukaryotic translation initiation factor 3 complex
GO	transcription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GO	translation [Amigo]  translation
GO	signalosome [Amigo]  signalosome
GO	metallopeptidase activity [Amigo]  metallopeptidase activity
GO	metal ion binding [Amigo]  metal ion binding
BIOCARTA	Hypoxia-Inducible Factor in the Cardiovascular System    [Genes]
KEGG	Lysine degradation
KEGG	Biotin metabolism
PubGene	COPS5
TreeFam	COPS5
CTD	10987 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	COPS5 Related clones (RZPD - Berlin)
	PubMed
PubMed	70 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:05:48 2008