CSDA (cold shock domain protein A)

Identity

Other names	CSDA1
	DBPA
	ZONAB
HGNC	CSDA
Location	12p13.1
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CSDA   2428
Entrez_Gene	CSDA  8531  cold shock domain protein A
	Cards
GeneCards	CSDA
Ensembl	CSDA [Search_View]   ENSG00000060138 [Gene_View]
Genatlas	CSDA
GeneLynx	CSDA
eGenome	CSDA
euGene	8531
	Genomic and cartography
GoldenPath	CSDA  -  12p13.1   chr12:10742955-10767171 -  12p13.2   [Description]    (hg18-March_2006)
Ensembl	CSDA - 12p13.2 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CSDA
	Gene and transcription
Genbank	AB209896 [ ENTREZ ]
Genbank	AK314846 [ ENTREZ ]
Genbank	BC008801 [ ENTREZ ]
Genbank	BC009744 [ ENTREZ ]
Genbank	BC015564 [ ENTREZ ]
RefSeq	NM_003651 [ SRS ]    NM_003651 [ ENTREZ ]
RefSeq	AC_000055 [ SRS ]    AC_000055 [ ENTREZ ]
RefSeq	AC_000144 [ SRS ]    AC_000144 [ ENTREZ ]
RefSeq	NC_000012 [ SRS ]    NC_000012 [ ENTREZ ]
RefSeq	NT_009714 [ SRS ]    NT_009714 [ ENTREZ ]
RefSeq	NW_001838052 [ SRS ]    NW_001838052 [ ENTREZ ]
RefSeq	NW_925328 [ SRS ]    NW_925328 [ ENTREZ ]
AceView	CSDA AceView - NCBI
Unigene	Hs.221889 [ SRS ]    Hs.221889 [ NCBI ]     HS221889 [ spliceNest ]
Fast-db	2699 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P16989 [ SRS]    P16989 [ EXPASY ]     P16989 [ INTERPRO ]     P16989 [ UNIPROT ]
Prosite	PS00352 COLD_SHOCK [ SRS ]    PS00352 COLD_SHOCK [ Expasy ]
Interpro	IPR011129 Cold_shock_prot [ SRS ]    IPR011129 Cold_shock_prot [ EBI ]
Interpro	IPR002059 CSP_DNA_bd [ SRS ]    IPR002059 CSP_DNA_bd [ EBI ]
Interpro	IPR012340 NA-bd_OB-fold [ SRS ]    IPR012340 NA-bd_OB-fold [ EBI ]
CluSTr	P16989
Pfam	PF00313 CSD [ SRS ]    PF00313 CSD [ Sanger ]    pfam00313 [ NCBI-CDD ]
Smart	SM00357 CSP [EMBL]
Prodom	PD000621 Cold_shock[INRA-Toulouse]
Prodom	P16989 DBPA_HUMAN [ Domain structure ]   P16989 DBPA_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P16989
HPRD	10347
	Protein Interaction databases
DIP	P16989
IntAct	P16989
	Polymorphism : SNP, mutations, diseases
OMIM	603437    [ map ]
GENECLINICS	603437
SNP	CSDA [dbSNP-NCBI]
SNP	NM_003651 [SNP-NCI]
SNP	CSDA [GeneSNPs - Utah]  CSDA] [HGBASE - SRS]
HAPMAP	CSDA [HAPMAP]
HGMD	CSDA
	General knowledge
Family Browser	CSDA [UCSC Family Browser]
SOURCE	NM_003651
SMD	Hs.221889
SAGE	Hs.221889
GO	negative regulation of transcription from RNA polymerase II promoter [Amigo]  negative regulation of transcription from RNA polymerase II promoter
GO	DNA binding [Amigo]  DNA binding
GO	double-stranded DNA binding [Amigo]  double-stranded DNA binding
GO	transcription factor activity [Amigo]  transcription factor activity
GO	RNA polymerase II transcription factor activity [Amigo]  RNA polymerase II transcription factor activity
GO	transcription corepressor activity [Amigo]  transcription corepressor activity
GO	nucleus [Amigo]  nucleus
GO	cytoplasm [Amigo]  cytoplasm
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	response to cold [Amigo]  response to cold
KEGG	Tight junction
PubGene	CSDA
TreeFam	CSDA
CTD	8531 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CSDA Related clones (RZPD - Berlin)
	PubMed
PubMed	17 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:06:13 2008