CTSD (cathepsin D)

Identity

Other names	CLN10
	CPSD
	MGC2311
HGNC	CTSD
Location	11p15.5
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	CTSD   2529
Entrez_Gene	CTSD  1509  cathepsin D
	Cards
GeneCards	CTSD
Ensembl	CTSD [Search_View]   ENSG00000117984 [Gene_View]
Genatlas	CTSD
GeneLynx	CTSD
eGenome	CTSD
euGene	1509
	Genomic and cartography
GoldenPath	CTSD  -  11p15.5   chr11:1730561-1741798 -  11p15.5   [Description]    (hg18-March_2006)
Ensembl	CTSD - 11p15.5 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	CTSD
	Gene and transcription
Genbank	AK022293 [ ENTREZ ]
Genbank	AK130178 [ ENTREZ ]
Genbank	BC001574 [ ENTREZ ]
Genbank	BC016320 [ ENTREZ ]
Genbank	BM762986 [ ENTREZ ]
RefSeq	NM_001909 [ SRS ]    NM_001909 [ ENTREZ ]
RefSeq	AC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeq	AC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeq	NC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeq	NT_009237 [ SRS ]    NT_009237 [ ENTREZ ]
RefSeq	NW_001838017 [ SRS ]    NW_001838017 [ ENTREZ ]
RefSeq	NW_924962 [ SRS ]    NW_924962 [ ENTREZ ]
AceView	CTSD AceView - NCBI
Unigene	Hs.654447 [ SRS ]    Hs.654447 [ NCBI ]     HS654447 [ spliceNest ]
Fast-db	698 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P07339 [ SRS]    P07339 [ EXPASY ]     P07339 [ INTERPRO ]     P07339 [ UNIPROT ]
Prosite	PS00141 ASP_PROTEASE [ SRS ]    PS00141 ASP_PROTEASE [ Expasy ]
Interpro	IPR001969 Pept_Asp_AS [ SRS ]    IPR001969 Pept_Asp_AS [ EBI ]
Interpro	IPR009007 Pept_Aspartc_cat [ SRS ]    IPR009007 Pept_Aspartc_cat [ EBI ]
Interpro	IPR001461 Peptidase_A1 [ SRS ]    IPR001461 Peptidase_A1 [ EBI ]
Interpro	IPR012848 Propep_A1 [ SRS ]    IPR012848 Propep_A1 [ EBI ]
CluSTr	P07339
Pfam	PF07966 A1_Propeptide [ SRS ]    PF07966 A1_Propeptide [ Sanger ]    pfam07966 [ NCBI-CDD ]
Pfam	PF00026 Asp [ SRS ]    PF00026 Asp [ Sanger ]    pfam00026 [ NCBI-CDD ]
Blocks	P07339
PDB	1LYA [ SRS ]    1LYA [ PdbSum ],   1LYA [ IMB ]   1LYA [ RSDB ]
PDB	1LYB [ SRS ]    1LYB [ PdbSum ],   1LYB [ IMB ]   1LYB [ RSDB ]
PDB	1LYW [ SRS ]    1LYW [ PdbSum ],   1LYW [ IMB ]   1LYW [ RSDB ]
HPRD	00291
	Protein Interaction databases
DIP	P07339
IntAct	P07339
	Polymorphism : SNP, mutations, diseases
OMIM	116840;610127    [ map ]
GENECLINICS	116840;610127
SNP	CTSD [dbSNP-NCBI]
SNP	NM_001909 [SNP-NCI]
SNP	CTSD [GeneSNPs - Utah]  CTSD] [HGBASE - SRS]
HAPMAP	CTSD [HAPMAP]
HGMD	CTSD
	General knowledge
Family Browser	CTSD [UCSC Family Browser]
SOURCE	NM_001909
SMD	Hs.654447
SAGE	Hs.654447
Enzyme	3.4.23.5 [ Enzyme-Expasy ]   3.4.23.5 [ Enzyme-SRS ]   3.4.23.5 [ IntEnz-EBI ]   3.4.23.5 [ BRENDA ]   3.4.23.5 [ KEGG ]   3.4.23.5 [ WIT ]
GO	cathepsin D activity [Amigo]  cathepsin D activity
GO	pepsin A activity [Amigo]  pepsin A activity
GO	extracellular region [Amigo]  extracellular region
GO	mitochondrion [Amigo]  mitochondrion
GO	lysosome [Amigo]  lysosome
GO	proteolysis [Amigo]  proteolysis
GO	peptidase activity [Amigo]  peptidase activity
GO	melanosome [Amigo]  melanosome
BIOCARTA	Downregulated of MTA-3 in ER-negative Breast Tumors    [Genes]
PubGene	CTSD
TreeFam	CTSD
CTD	1509 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	CTSD Related clones (RZPD - Berlin)
	PubMed
PubMed	123 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:06:35 2008