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DDX3Y (DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked)

Identity

Other namesDBY
HGNC (Hugo) DDX3Y
Location Yq11.21
Location_base_pair Starts at 13525413 and ends at 13541784 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DDX3Y   2699
Entrez_Gene (NCBI)DDX3Y  8653  DEAD (Asp-Glu-Ala-Asp) box polypeptide 3, Y-linked
Cards
GeneCards (Weizmann)DDX3Y
Ensembl (Hinxton)ENSG00000067048 [Gene_View]  DDX3Y [Vega]
AceView (NCBI)DDX3Y
Genatlas (Paris)DDX3Y
euGene (Indiana)8653
SOURCE (Stanford)NM_001122665 NM_004660
Gene Expression (Array Express) ENSG00000067048
Genomic and cartography
GoldenPath (UCSC)DDX3Y  -  Yq11.21   chrY:13525413-13541784 +  Yq11.21   [Description]    (hg18-March_2006)
EnsemblDDX3Y - Yq11.21 [CytoView]
Mapping of homologs : NCBIDDX3Y [Mapview]
OMIM400010   
Gene and transcription
Gene : Genbank (Entrez)AF000984 AF000985 AK296366 AK302172 AK303176
Reference sequence (RefSeq transcript) :SRSNM_001122665 NM_004660
Reference transcript : EntrezNM_001122665 NM_004660
RefSeq genomic : SRSAC_000066 AC_000156 NC_000024 NG_012831 NT_011875 NW_001842435 NW_927672
RefSeq genomic : EntrezAC_000066 AC_000156 NC_000024 NG_012831 NT_011875 NW_001842435 NW_927672
Consensus coding sequences : CCDS NCBIDDX3Y
Cluster EST : UnigeneHs.99120 [ SRS ] Hs.99120 [ NCBI ]
Alternative Splicing : Fast-db (Paris)1280
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtO15523 (SRS) O15523 (Expasy) O15523 (Uniprot)
With graphics : InterProO15523
Splice isoforms : VarSplice FASTAO15523(VarSplice FASTA)
Domaine pattern : Prosite (SRS)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domain pattern : Prosite (Expaxy)DEAD_ATP_HELICASE (PS00039)    HELICASE_ATP_BIND_1 (PS51192)    HELICASE_CTER (PS51194)    Q_MOTIF (PS51195)   
Domains : Interpro (SRS)DEAD-like_N    DNA/RNA_helicase_C    DNA/RNA_helicase_DEAD/DEAH_N    Helicase_SF1/SF2_ATP-bd    RNA-helicase_DEAD-box_CS    RNA_helicase_DEAD_Q_motif   
Domains : Interpro (EBI)DEAD-like_N    DNA/RNA_helicase_C    DNA/RNA_helicase_DEAD/DEAH_N    Helicase_SF1/SF2_ATP-bd    RNA-helicase_DEAD-box_CS    RNA_helicase_DEAD_Q_motif   
Related proteins : CluSTrO15523
Domain families : Pfam SRSDEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam SangerDEAD (PF00270)    Helicase_C (PF00271)   
Domain families : Pfam NCBIpfam00270    pfam00271   
Domain families : Smart EMBLDEXDc (SM00487)  HELICc (SM00490)  
Blocks (Seattle)O15523
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD02452
Protein Interaction databases
DIP (DOE-UCLA)O15523
IntAct (EBI)O15523
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIDDX3Y
SNP : GeneSNP UtahDDX3Y
SNP : HGBaseDDX3Y
Genetic variants : HAPMAPDDX3Y
Somatic Mutations in Cancer : COSMICDDX3Y 
Mutations and Diseases : HGMDDDX3Y
Hereditary diseases : OMIM400010   
Hereditary diseases : GENETests400010   
Diseases : Genetic AssociationDDX3Y
General knowledge
Homologs : HomoloGeneDDX3Y
Homology/Alignments : Family Browser UCSCDDX3Y
Phylogenetic Trees/Animal Genes : TreeFamDDX3Y
Catalytic activity : Enzyme3.6.1.- [ Enzyme-Expasy ]   3.6.1.- [ Enzyme-SRS ]   3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   
Chemical/Protein Interactions : CTD8653
Keywords Ontology : AmiGOnucleotide binding  DNA binding  RNA binding  helicase activity  ATP binding  nucleus  cytoplasm  plasma membrane  ATP-dependent helicase activity  hydrolase activity  
Keywords Ontology : EGO-EBInucleotide binding  DNA binding  RNA binding  helicase activity  ATP binding  nucleus  cytoplasm  plasma membrane  ATP-dependent helicase activity  hydrolase activity  
Pathways : BIOCARTA
Pathways : KEGG
Other databases
Probes
Probes : ImagenesDDX3Y Related clones (RZPD - Berlin)
Literature
PubMed19 Pubmed reference(s) in Entrez
PubGeneDDX3Y
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:34:49 CET 2010
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