DDX53 (DEAD (Asp-Glu-Ala-Asp) box polypeptide 53)

Identity

Other names	CAGE
Hugo	DDX53
Location	Xp22.13
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
Hugo	DDX53
GDB	DDX53
Entrez_Gene	DDX53  168400  DEAD (Asp-Glu-Ala-Asp) box polypeptide 53
	Cards
GeneCards	DDX53
Ensembl	DDX53 [Search_View]   ENSG00000184735 [Gene_View]
Genatlas	DDX53
GeneLynx	DDX53
eGenome	DDX53
euGene	168400
	Genomic and cartography
GoldenPath	DDX53  -  Xp22.13   chrX:22928008-22930125 +  Xp22.11   [Description]    (hg18-March_2006)
Ensembl	DDX53 - Xp22.11 [CytoView]
NCBI	Mapview
HomoloGene	DDX53
	Gene and transcription
Genbank	AY039237 [ ENTREZ ]
Genbank	BC051703 [ ENTREZ ]
Genbank	BC067878 [ ENTREZ ]
RefSeq	NM_182699 [ SRS ]    NM_182699 [ ENTREZ ]
RefSeq	AC_000066 [ SRS ]    AC_000066 [ ENTREZ ]
RefSeq	AC_000155 [ SRS ]    AC_000155 [ ENTREZ ]
RefSeq	NC_000023 [ SRS ]    NC_000023 [ ENTREZ ]
RefSeq	NT_011757 [ SRS ]    NT_011757 [ ENTREZ ]
RefSeq	NW_001842360 [ SRS ]    NW_001842360 [ ENTREZ ]
RefSeq	NW_927700 [ SRS ]    NW_927700 [ ENTREZ ]
AceView	DDX53 AceView - NCBI
Unigene	Hs.434416 [ SRS ]    Hs.434416 [ NCBI ]     HS434416 [ spliceNest ]
	Protein : pattern, domain, 3D structure
SwissProt	Q86TM3 [ SRS]    Q86TM3 [ EXPASY ]     Q86TM3 [ INTERPRO ]
Prosite	PS00039 DEAD_ATP_HELICASE [ SRS ]    PS00039 DEAD_ATP_HELICASE [ Expasy ]
Prosite	PS51192 HELICASE_ATP_BIND_1 [ SRS ]    PS51192 HELICASE_ATP_BIND_1 [ Expasy ]
Prosite	PS51194 HELICASE_CTER [ SRS ]    PS51194 HELICASE_CTER [ Expasy ]
Prosite	PS50084 KH_TYPE_1 [ SRS ]    PS50084 KH_TYPE_1 [ Expasy ]
Prosite	PS51195 Q_MOTIF [ SRS ]    PS51195 Q_MOTIF [ Expasy ]
Interpro	IPR014001 DEAD-like_N [ SRS ]    IPR014001 DEAD-like_N [ EBI ]
Interpro	IPR001650 DNA/RNA_helicase_C [ SRS ]    IPR001650 DNA/RNA_helicase_C [ EBI ]
Interpro	IPR011545 DNA/RNA_helicase_DEAD/DEAH_N [ SRS ]    IPR011545 DNA/RNA_helicase_DEAD/DEAH_N [ EBI ]
Interpro	IPR014021 Helicase_SF1/SF2_ATP-bd [ SRS ]    IPR014021 Helicase_SF1/SF2_ATP-bd [ EBI ]
Interpro	IPR004087 KH [ SRS ]    IPR004087 KH [ EBI ]
Interpro	IPR004088 KH_type_1 [ SRS ]    IPR004088 KH_type_1 [ EBI ]
Interpro	IPR000629 RNA-helicase_DEAD-box_CS [ SRS ]    IPR000629 RNA-helicase_DEAD-box_CS [ EBI ]
Interpro	IPR014014 RNA_helicase_DEAD_Q_motif [ SRS ]    IPR014014 RNA_helicase_DEAD_Q_motif [ EBI ]
CluSTr	Q86TM3
Pfam	PF00270 DEAD [ SRS ]    PF00270 DEAD [ Sanger ]    pfam00270 [ NCBI-CDD ]
Pfam	PF00271 Helicase_C [ SRS ]    PF00271 Helicase_C [ Sanger ]    pfam00271 [ NCBI-CDD ]
Pfam	PF00013 KH_1 [ SRS ]    PF00013 KH_1 [ Sanger ]    pfam00013 [ NCBI-CDD ]
Smart	SM00487 DEXDc [EMBL]
Smart	SM00490 HELICc [EMBL]
Smart	SM00322 KH [EMBL]
Blocks	Q86TM3
PDB	DDX53 [ SRS ]    DDX53 [ PdbSum ],   DDX53 [ IMB ]   DDX53 [ RSDB ]
HPRD	06466
	Protein Interaction databases
DIP	Q86TM3
IntAct	Q86TM3
	Polymorphism : SNP, mutations, diseases
SNP	DDX53 [dbSNP-NCBI]
SNP	NM_182699 [SNP-NCI]
SNP	DDX53 [GeneSNPs - Utah]  DDX53] [HGBASE - SRS]
HAPMAP	DDX53 [HAPMAP]
COSMIC	DDX53 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	DDX53
	General knowledge
Family Browser	DDX53 [UCSC Family Browser]
SOURCE	NM_182699
SMD	Hs.434416
SAGE	Hs.434416
Enzyme	3.6.1.- [ Enzyme-Expasy ]   3.6.1.- [ Enzyme-SRS ]   3.6.1.- [ IntEnz-EBI ]   3.6.1.- [ BRENDA ]   3.6.1.- [ KEGG ]   3.6.1.- [ WIT ]
GO	nucleotide binding [Amigo]  nucleotide binding
GO	RNA binding [Amigo]  RNA binding
GO	ATP binding [Amigo]  ATP binding
GO	nucleus [Amigo]  nucleus
GO	ATP-dependent helicase activity [Amigo]  ATP-dependent helicase activity
GO	hydrolase activity [Amigo]  hydrolase activity
PubGene	DDX53
TreeFam	DDX53
CTD	168400 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	DDX53 Related clones (RZPD - Berlin)
	PubMed
PubMed	6 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Jul 14 17:04:34 2008