DEAF1 (deformed epidermal autoregulatory factor 1 (Drosophila))

Identity

Other names	NUDR
	SPN
	ZMYND5
HGNC	DEAF1
Location	11p15.5
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	DEAF1   14677
Entrez_Gene	DEAF1  10522  deformed epidermal autoregulatory factor 1 (Drosophila)
	Cards
GeneCards	DEAF1
Ensembl	DEAF1 [Search_View]   ENSG00000177030 [Gene_View]
Genatlas	DEAF1
GeneLynx	DEAF1
eGenome	DEAF1
euGene	10522
	Genomic and cartography
GoldenPath	DEAF1  -  11p15.5   chr11:634225-685740 -  11p15.5   [Description]    (hg18-March_2006)
Ensembl	DEAF1 - 11p15.5 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	DEAF1
	Gene and transcription
Genbank	AB209831 [ ENTREZ ]
Genbank	AF007165 [ ENTREZ ]
Genbank	AF049459 [ ENTREZ ]
Genbank	AF049460 [ ENTREZ ]
Genbank	AF068892 [ ENTREZ ]
RefSeq	NM_021008 [ SRS ]    NM_021008 [ ENTREZ ]
RefSeq	AC_000054 [ SRS ]    AC_000054 [ ENTREZ ]
RefSeq	AC_000143 [ SRS ]    AC_000143 [ ENTREZ ]
RefSeq	NC_000011 [ SRS ]    NC_000011 [ ENTREZ ]
RefSeq	NT_035113 [ SRS ]    NT_035113 [ ENTREZ ]
RefSeq	NW_001838016 [ SRS ]    NW_001838016 [ ENTREZ ]
RefSeq	NW_924962 [ SRS ]    NW_924962 [ ENTREZ ]
AceView	DEAF1 AceView - NCBI
Unigene	Hs.243994 [ SRS ]    Hs.243994 [ NCBI ]     HS243994 [ spliceNest ]
Fast-db	365 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	O75398 [ SRS]    O75398 [ EXPASY ]     O75398 [ INTERPRO ]     O75398 [ UNIPROT ]
Prosite	PS50864 SAND [ SRS ]    PS50864 SAND [ Expasy ]
Prosite	PS01360 ZF_MYND_1 [ SRS ]    PS01360 ZF_MYND_1 [ Expasy ]
Prosite	PS50865 ZF_MYND_2 [ SRS ]    PS50865 ZF_MYND_2 [ Expasy ]
Interpro	IPR000770 SAND [ SRS ]    IPR000770 SAND [ EBI ]
Interpro	IPR010919 SAND_like [ SRS ]    IPR010919 SAND_like [ EBI ]
Interpro	IPR002893 Znf_MYND [ SRS ]    IPR002893 Znf_MYND [ EBI ]
CluSTr	O75398
Pfam	PF01342 SAND [ SRS ]    PF01342 SAND [ Sanger ]    pfam01342 [ NCBI-CDD ]
Pfam	PF01753 zf-MYND [ SRS ]    PF01753 zf-MYND [ Sanger ]    pfam01753 [ NCBI-CDD ]
Smart	SM00258 SAND [EMBL]
Blocks	O75398
PDB	2FV6 [ SRS ]    2FV6 [ PdbSum ],   2FV6 [ IMB ]   2FV6 [ RSDB ]
PDB	2JW6 [ SRS ]    2JW6 [ PdbSum ],   2JW6 [ IMB ]   2JW6 [ RSDB ]
HPRD	04027
	Protein Interaction databases
DIP	O75398
IntAct	O75398
	Polymorphism : SNP, mutations, diseases
OMIM	602635    [ map ]
GENECLINICS	602635
SNP	DEAF1 [dbSNP-NCBI]
SNP	NM_021008 [SNP-NCI]
SNP	DEAF1 [GeneSNPs - Utah]  DEAF1] [HGBASE - SRS]
HAPMAP	DEAF1 [HAPMAP]
HGMD	DEAF1
	General knowledge
Family Browser	DEAF1 [UCSC Family Browser]
SOURCE	NM_021008
SMD	Hs.243994
SAGE	Hs.243994
GO	DNA binding [Amigo]  DNA binding
GO	binding [Amigo]  binding
GO	extracellular region [Amigo]  extracellular region
GO	nucleus [Amigo]  nucleus
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	transcription from RNA polymerase II promoter [Amigo]  transcription from RNA polymerase II promoter
GO	germ cell development [Amigo]  germ cell development
GO	zinc ion binding [Amigo]  zinc ion binding
GO	anatomical structure morphogenesis [Amigo]  anatomical structure morphogenesis
GO	metal ion binding [Amigo]  metal ion binding
PubGene	DEAF1
TreeFam	DEAF1
CTD	10522 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	DEAF1 Related clones (RZPD - Berlin)
	PubMed
PubMed	13 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:07:40 2008