DEFA6 (defensin, alpha 6, Paneth cell-specific)

Identity

Other names	DEF6
	HD-6
HGNC	DEFA6
Location	8p23.1
Location_base_pair	Starts at 6769629 and ends at 6771008 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	DEFA6   2765
Entrez_Gene	DEFA6  1671  defensin, alpha 6, Paneth cell-specific
	Cards
GeneCards	DEFA6
Ensembl	DEFA6 [Search_View]   ENSG00000164822 [Gene_View]
Genatlas	DEFA6
GeneLynx	DEFA6
eGenome	DEFA6
euGene	1671
	Genomic and cartography
GoldenPath	DEFA6  -  8p23.1   chr8:6769629-6771008 -  8p23.1   [Description]    (hg18-March_2006)
Ensembl	DEFA6 - 8p23.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	DEFA6
	Gene and transcription
Genbank	BC069667 [ ENTREZ ]
Genbank	BC069710 [ ENTREZ ]
Genbank	BC069728 [ ENTREZ ]
Genbank	BC069769 [ ENTREZ ]
Genbank	BC093951 [ ENTREZ ]
RefSeq	NM_001926 [ SRS ]    NM_001926 [ ENTREZ ]
RefSeq	AC_000051 [ SRS ]    AC_000051 [ ENTREZ ]
RefSeq	AC_000140 [ SRS ]    AC_000140 [ ENTREZ ]
RefSeq	NC_000008 [ SRS ]    NC_000008 [ ENTREZ ]
RefSeq	NT_023736 [ SRS ]    NT_023736 [ ENTREZ ]
RefSeq	NW_001839109 [ SRS ]    NW_001839109 [ ENTREZ ]
RefSeq	NW_923840 [ SRS ]    NW_923840 [ ENTREZ ]
AceView	DEFA6 AceView - NCBI
Unigene	Hs.711 [ SRS ]    Hs.711 [ NCBI ]     HS711 [ spliceNest ]
Fast-db	1047 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q01524 [ SRS]    Q01524 [ EXPASY ]     Q01524 [ INTERPRO ]     Q01524 [ UNIPROT ]
Prosite	PS00269 DEFENSIN [ SRS ]    PS00269 DEFENSIN [ Expasy ]
Interpro	IPR016327 Alpha-defensin [ SRS ]    IPR016327 Alpha-defensin [ EBI ]
Interpro	IPR006081 Defensin_alpha [ SRS ]    IPR006081 Defensin_alpha [ EBI ]
Interpro	IPR006080 Defensin_mammal [ SRS ]    IPR006080 Defensin_mammal [ EBI ]
Interpro	IPR002366 Defensin_propep [ SRS ]    IPR002366 Defensin_propep [ EBI ]
CluSTr	Q01524
Pfam	PF00323 Defensin_1 [ SRS ]    PF00323 Defensin_1 [ Sanger ]    pfam00323 [ NCBI-CDD ]
Pfam	PF00879 Defensin_propep [ SRS ]    PF00879 Defensin_propep [ Sanger ]    pfam00879 [ NCBI-CDD ]
Smart	SM00048 DEFSN [EMBL]
Blocks	Q01524
PDB	1ZMQ [ SRS ]    1ZMQ [ PdbSum ],   1ZMQ [ IMB ]   1ZMQ [ RSDB ]
HPRD	02719
	Protein Interaction databases
DIP	Q01524
IntAct	Q01524
	Polymorphism : SNP, mutations, diseases
OMIM	600471    [ map ]
GENECLINICS	600471
SNP	DEFA6 [dbSNP-NCBI]
SNP	NM_001926 [SNP-NCI]
SNP	DEFA6 [GeneSNPs - Utah]  DEFA6] [HGBASE - SRS]
HAPMAP	DEFA6 [HAPMAP]
HGMD	DEFA6
	General knowledge
Family Browser	DEFA6 [UCSC Family Browser]
SOURCE	NM_001926
SMD	Hs.711
SAGE	Hs.711
GO	extracellular region [Amigo]  extracellular region
GO	xenobiotic metabolic process [Amigo]  xenobiotic metabolic process
GO	defense response to bacterium [Amigo]  defense response to bacterium
GO	defense response to fungus [Amigo]  defense response to fungus
KEGG	Neuroactive ligand-receptor interaction
PubGene	DEFA6
TreeFam	DEFA6
CTD	1671 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	DEFA6 Related clones (RZPD - Berlin)
	PubMed
PubMed	7 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:38:05 2008