Atlas of Genetics and Cytogenetics in Oncology and Haematology

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DSG3 (desmoglein 3)

Identity

Other namesCDHF6
DKFZp686P23184
PVA
HGNC (Hugo) DSG3
Location 18q12.1
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)DSG3   3050
Entrez_Gene (NCBI)DSG3  1830  desmoglein 3
Cards
GeneCards (Weizmann)DSG3
Ensembl (Hinxton)ENSG00000134757 [Gene_View]  DSG3 [Vega]
AceView (NCBI)DSG3
Genatlas (Paris)DSG3
euGene (Indiana)1830
SOURCE (Stanford)NM_001944
Gene Expression (Array Express) ENSG00000134757
Genomic and cartography
GoldenPath (UCSC)DSG3  -  18q12.1
EnsemblDSG3 - [CytoView]
Mapping of homologs : NCBIDSG3 [Mapview]
OMIM169615   
Gene and transcription
Gene : Genbank (Entrez)AI608626 AK290367 BC063544 BC105997 BX110234
Reference sequence (RefSeq transcript) :SRSNM_001944
Reference transcript : EntrezNM_001944
RefSeq genomic : SRSAC_000061 AC_000150 NC_000018 NT_010966 NW_001838467 NW_927095
RefSeq genomic : EntrezAC_000061 AC_000150 NC_000018 NT_010966 NW_001838467 NW_927095
Consensus coding sequences : CCDS NCBIDSG3
Cluster EST : UnigeneHs.1925 [ SRS ] Hs.1925 [ NCBI ]
Alternative Splicing : Fast-db (Paris)3059
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtP32926 (SRS) P32926 (Expasy) P32926 (Uniprot)
With graphics : InterProP32926
Splice isoforms : VarSplice FASTAP32926(VarSplice FASTA)
Domaine pattern : Prosite (SRS)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domain pattern : Prosite (Expaxy)CADHERIN_1 (PS00232)    CADHERIN_2 (PS50268)   
Domains : Interpro (SRS)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Desmo_cadherin    Desmoglein   
Domains : Interpro (EBI)Cadherin    Cadherin-like    Cadherin_CS    Cadherin_cytoplasmic-dom    Desmo_cadherin    Desmoglein   
Related proteins : CluSTrP32926
Domain families : Pfam SRSCadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam SangerCadherin (PF00028)    Cadherin_C (PF01049)   
Domain families : Pfam NCBIpfam00028    pfam01049   
Domain families : Smart EMBLCA (SM00112)  
Blocks (Seattle)P32926
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
Human Protein AtlasENSG00000134757
HPRD01355
Protein Interaction databases
DIP (DOE-UCLA)P32926
IntAct (EBI)P32926
FunCoupENSG00000134757
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIDSG3
SNP : GeneSNP UtahDSG3
SNP : HGBaseDSG3
Genetic variants : HAPMAPDSG3
Somatic Mutations in Cancer : COSMICDSG3 
Mutations and Diseases : HGMDDSG3
Hereditary diseases : OMIM169615   
Hereditary diseases : GENETests169615   
Diseases : Genetic AssociationDSG3
General knowledge
Homologs : HomoloGeneDSG3
Homology/Alignments : Family Browser UCSCDSG3
Phylogenetic Trees/Animal Genes : TreeFamDSG3
Chemical/Protein Interactions : CTD1830
Keywords Ontology : AmiGOcalcium ion binding  cytosol  plasma membrane  cell adhesion  homophilic cell adhesion  integral to membrane  cell junction  desmosome  
Keywords Ontology : EGO-EBIcalcium ion binding  cytosol  plasma membrane  cell adhesion  homophilic cell adhesion  integral to membrane  cell junction  desmosome  
Pathways : BIOCARTA
Pathways : KEGGCell Communication
Other databases
Probes
Probes : ImagenesDSG3 Related clones (RZPD - Berlin)
Literature
PubMed54 Pubmed reference(s) in Entrez
PubGeneDSG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated07-2010Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 31 19:50:21 CEST 2010
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