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ELAC1 (elaC homolog 1 (E. coli))

Identity

Other namesD29
HGNC (Hugo) ELAC1
Location 18q21.2
Location_base_pair Starts at 46748385 and ends at 46768488 bp from pter ( according to hg18-March_2006)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ELAC1   14197
Entrez_Gene (NCBI)ELAC1  55520  elaC homolog 1 (E. coli)
Cards
GeneCards (Weizmann)ELAC1
Ensembl (Hinxton)ENSG00000141642 [Gene_View]  ELAC1 [Vega]
AceView (NCBI)ELAC1
Genatlas (Paris)ELAC1
euGene (Indiana)55520
SOURCE (Stanford)NM_018696
Gene Expression (Array Express) ENSG00000141642
Genomic and cartography
GoldenPath (UCSC)ELAC1  -  18q21.2   chr18:46748385-46768488 +  18q21.2   [Description]    (hg18-March_2006)
EnsemblELAC1 - 18q21.2 [CytoView]
Mapping of homologs : NCBIELAC1 [Mapview]
OMIM608079   
Gene and transcription
Gene : Genbank (Entrez)AB029151 AF308695 AI870985 AK024822 AK223507
Reference sequence (RefSeq transcript) :SRSNM_018696
Reference transcript : EntrezNM_018696
RefSeq genomic : SRSAC_000061 AC_000150 NC_000018 NT_010966 NW_001838468 NW_927106
RefSeq genomic : EntrezAC_000061 AC_000150 NC_000018 NT_010966 NW_001838468 NW_927106
Consensus coding sequences : CCDS NCBIELAC1
Cluster EST : UnigeneHs.657360 [ SRS ] Hs.657360 [ NCBI ]
Alternative Splicing : Fast-db (Paris)4538
Protein : pattern, domain, 3D structure
Protein : UniProt/SwissProtQ9H777 (SRS) Q9H777 (Expasy) Q9H777 (Uniprot)
With graphics : InterProQ9H777
Splice isoforms : VarSplice FASTAQ9H777(VarSplice FASTA)
Domains : Interpro (SRS)Blactmase-like    RNase_Z   
Domains : Interpro (EBI)Blactmase-like    RNase_Z   
Related proteins : CluSTrQ9H777
Domain families : Pfam SRS
Domain families : Pfam Sanger
Domain families : Pfam NCBI
Domain families : Smart EMBLLactamase_B (SM00849)  
Blocks (Seattle)Q9H777
Crystal structure of protein : PDB SRS
Crystal structure of protein : PDBSum
Crystal structure of protein : IMB
Crystal structure of protein : PDB RSDB
HPRD16275
Protein Interaction databases
DIP (DOE-UCLA)Q9H777
IntAct (EBI)Q9H777
Polymorphism : SNP, mutations, diseases
Single Nucleotide Polymorphism (SNP) : dbSNP NCBIELAC1
SNP : GeneSNP UtahELAC1
SNP : HGBaseELAC1
Genetic variants : HAPMAPELAC1
Somatic Mutations in Cancer : COSMICELAC1 
Mutations and Diseases : HGMDELAC1
Hereditary diseases : OMIM608079   
Hereditary diseases : GENETests608079   
Diseases : Genetic AssociationELAC1
General knowledge
Homologs : HomoloGeneELAC1
Homology/Alignments : Family Browser UCSCELAC1
Phylogenetic Trees/Animal Genes : TreeFamELAC1
Catalytic activity : Enzyme3.1.26.11 [ Enzyme-Expasy ]   3.1.26.11 [ Enzyme-SRS ]   3.1.26.11 [ IntEnz-EBI ]   3.1.26.11 [ BRENDA ]   3.1.26.11 [ KEGG ]   
Chemical/Protein Interactions : CTD55520
Keywords Ontology : AmiGOendonuclease activity  nucleus  tRNA processing  zinc ion binding  hydrolase activity  endoribonuclease activity, producing 5'-phosphomonoesters  tRNA 3'-trailer cleavage  metal ion binding  
Keywords Ontology : EGO-EBIendonuclease activity  nucleus  tRNA processing  zinc ion binding  hydrolase activity  endoribonuclease activity, producing 5'-phosphomonoesters  tRNA 3'-trailer cleavage  metal ion binding  
Pathways : BIOCARTAALK in cardiac myocytes [Genes]    CTCF: First Multivalent Nuclear Factor [Genes]    Cell Cycle: G1/S Check Point [Genes]    NFkB activation by Nontypeable Hemophilus influenzae [Genes]    TGF beta signaling pathway [Genes]    Role of Tob in T-cell activation [Genes]    WNT Signaling Pathway [Genes]   
Pathways : KEGG
Other databases
Probes
Probes : ImagenesELAC1 Related clones (RZPD - Berlin)
Literature
PubMed9 Pubmed reference(s) in Entrez
PubGeneELAC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated03-2009Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Feb 27 10:37:52 CET 2010
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