F13A1 (coagulation factor XIII, A1 polypeptide)

Identity

Other names	F13A
HGNC	F13A1
Location	6p25.3-p24.3
Location_base_pair	Starts at 6089310 and ends at 6265923 bp from pter ( according to hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

External links

	Nomenclature
HGNC	F13A1   3531
Entrez_Gene	F13A1  2162  coagulation factor XIII, A1 polypeptide
	Cards
GeneCards	F13A1
Ensembl	F13A1 [Search_View]   ENSG00000124491 [Gene_View]
Genatlas	F13A1
GeneLynx	F13A1
eGenome	F13A1
euGene	2162
	Genomic and cartography
GoldenPath	F13A1  -     chr6:6089310-6265923 -  6p25.1   [Description]    (hg18-March_2006)
Ensembl	F13A1 - 6p25.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	F13A1
	Gene and transcription
Genbank	AB208852 [ ENTREZ ]
Genbank	AK130666 [ ENTREZ ]
Genbank	AK312735 [ ENTREZ ]
Genbank	BC027963 [ ENTREZ ]
Genbank	BP251770 [ ENTREZ ]
RefSeq	NM_000129 [ SRS ]    NM_000129 [ ENTREZ ]
RefSeq	AC_000049 [ SRS ]    AC_000049 [ ENTREZ ]
RefSeq	AC_000138 [ SRS ]    AC_000138 [ ENTREZ ]
RefSeq	NC_000006 [ SRS ]    NC_000006 [ ENTREZ ]
RefSeq	NG_008107 [ SRS ]    NG_008107 [ ENTREZ ]
RefSeq	NT_034880 [ SRS ]    NT_034880 [ ENTREZ ]
RefSeq	NW_001838973 [ SRS ]    NW_001838973 [ ENTREZ ]
RefSeq	NW_922984 [ SRS ]    NW_922984 [ ENTREZ ]
AceView	F13A1 AceView - NCBI
Unigene	Hs.335513 [ SRS ]    Hs.335513 [ NCBI ]     HS335513 [ spliceNest ]
Fast-db	1798 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P00488 [ SRS]    P00488 [ EXPASY ]     P00488 [ INTERPRO ]     P00488 [ UNIPROT ]
Prosite	PS00547 TRANSGLUTAMINASES [ SRS ]    PS00547 TRANSGLUTAMINASES [ Expasy ]
Interpro	IPR008957 Fibronectin_typ-III-like_fold [ SRS ]    IPR008957 Fibronectin_typ-III-like_fold [ EBI ]
Interpro	IPR013783 Ig-like_fold [ SRS ]    IPR013783 Ig-like_fold [ EBI ]
Interpro	IPR008958 Transglutaminase_C [ SRS ]    IPR008958 Transglutaminase_C [ EBI ]
Interpro	IPR013808 Transglutaminase_CS [ SRS ]    IPR013808 Transglutaminase_CS [ EBI ]
Interpro	IPR001102 Transglutaminase_N [ SRS ]    IPR001102 Transglutaminase_N [ EBI ]
Interpro	IPR002931 Trnsglumase_like [ SRS ]    IPR002931 Trnsglumase_like [ EBI ]
CluSTr	P00488
Pfam	PF00927 Transglut_C [ SRS ]    PF00927 Transglut_C [ Sanger ]    pfam00927 [ NCBI-CDD ]
Pfam	PF01841 Transglut_core [ SRS ]    PF01841 Transglut_core [ Sanger ]    pfam01841 [ NCBI-CDD ]
Pfam	PF00868 Transglut_N [ SRS ]    PF00868 Transglut_N [ Sanger ]    pfam00868 [ NCBI-CDD ]
Smart	SM00460 TGc [EMBL]
Blocks	P00488
PDB	1EVU [ SRS ]    1EVU [ PdbSum ],   1EVU [ IMB ]   1EVU [ RSDB ]
PDB	1EX0 [ SRS ]    1EX0 [ PdbSum ],   1EX0 [ IMB ]   1EX0 [ RSDB ]
PDB	1F13 [ SRS ]    1F13 [ PdbSum ],   1F13 [ IMB ]   1F13 [ RSDB ]
PDB	1FIE [ SRS ]    1FIE [ PdbSum ],   1FIE [ IMB ]   1FIE [ RSDB ]
PDB	1GGT [ SRS ]    1GGT [ PdbSum ],   1GGT [ IMB ]   1GGT [ RSDB ]
PDB	1GGU [ SRS ]    1GGU [ PdbSum ],   1GGU [ IMB ]   1GGU [ RSDB ]
PDB	1GGY [ SRS ]    1GGY [ PdbSum ],   1GGY [ IMB ]   1GGY [ RSDB ]
PDB	1QRK [ SRS ]    1QRK [ PdbSum ],   1QRK [ IMB ]   1QRK [ RSDB ]
HPRD	00604
	Protein Interaction databases
DIP	P00488
IntAct	P00488
	Polymorphism : SNP, mutations, diseases
OMIM	134570    [ map ]
GENECLINICS	134570
SNP	F13A1 [dbSNP-NCBI]
SNP	NM_000129 [SNP-NCI]
SNP	F13A1 [GeneSNPs - Utah]  F13A1] [HGBASE - SRS]
HAPMAP	F13A1 [HAPMAP]
HGMD	F13A1
	General knowledge
Family Browser	F13A1 [UCSC Family Browser]
SOURCE	NM_000129
SMD	Hs.335513
SAGE	Hs.335513
Enzyme	2.3.2.13 [ Enzyme-Expasy ]   2.3.2.13 [ Enzyme-SRS ]   2.3.2.13 [ IntEnz-EBI ]   2.3.2.13 [ BRENDA ]   2.3.2.13 [ KEGG ]   2.3.2.13 [ WIT ]
GO	protein-glutamine gamma-glutamyltransferase activity [Amigo]  protein-glutamine gamma-glutamyltransferase activity
GO	protein-glutamine gamma-glutamyltransferase activity [Amigo]  protein-glutamine gamma-glutamyltransferase activity
GO	calcium ion binding [Amigo]  calcium ion binding
GO	extracellular region [Amigo]  extracellular region
GO	extracellular region [Amigo]  extracellular region
GO	cytoplasm [Amigo]  cytoplasm
GO	blood coagulation [Amigo]  blood coagulation
GO	acyltransferase activity [Amigo]  acyltransferase activity
GO	transferase activity [Amigo]  transferase activity
GO	peptide cross-linking [Amigo]  peptide cross-linking
BIOCARTA	Fibrinolysis Pathway    [Genes]
KEGG	Complement and coagulation cascades
PubGene	F13A1
TreeFam	F13A1
CTD	2162 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	F13A1 Related clones (RZPD - Berlin)
	PubMed
PubMed	163 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

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Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 18 14:40:37 2008