FOXA1 (forkhead box A1)

Identity

Other names	HNF3A
	MGC33105
	TCF3A
HGNC	FOXA1
Location	14q12-q13
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	FOXA1   5021
Entrez_Gene	FOXA1  3169  forkhead box A1
	Cards
GeneCards	FOXA1
Ensembl	FOXA1 [Search_View]   ENSG00000129514 [Gene_View]
Genatlas	FOXA1
GeneLynx	FOXA1
eGenome	FOXA1
euGene	3169
	Genomic and cartography
GoldenPath	FOXA1  -     chr14:37128942-37134240 -  14q21.1   [Description]    (hg18-March_2006)
Ensembl	FOXA1 - 14q21.1 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	FOXA1
	Gene and transcription
Genbank	AK313785 [ ENTREZ ]
Genbank	AM392863 [ ENTREZ ]
Genbank	AM393239 [ ENTREZ ]
Genbank	AM393310 [ ENTREZ ]
Genbank	AM393369 [ ENTREZ ]
RefSeq	NM_004496 [ SRS ]    NM_004496 [ ENTREZ ]
RefSeq	AC_000057 [ SRS ]    AC_000057 [ ENTREZ ]
RefSeq	AC_000146 [ SRS ]    AC_000146 [ ENTREZ ]
RefSeq	NC_000014 [ SRS ]    NC_000014 [ ENTREZ ]
RefSeq	NT_026437 [ SRS ]    NT_026437 [ ENTREZ ]
RefSeq	NW_001838110 [ SRS ]    NW_001838110 [ ENTREZ ]
RefSeq	NW_925539 [ SRS ]    NW_925539 [ ENTREZ ]
AceView	FOXA1 AceView - NCBI
Unigene	Hs.163484 [ SRS ]    Hs.163484 [ NCBI ]     HS163484 [ spliceNest ]
Fast-db	165 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	P55317 [ SRS]    P55317 [ EXPASY ]     P55317 [ INTERPRO ]     P55317 [ UNIPROT ]
Prosite	PS00657 FORK_HEAD_1 [ SRS ]    PS00657 FORK_HEAD_1 [ Expasy ]
Prosite	PS00658 FORK_HEAD_2 [ SRS ]    PS00658 FORK_HEAD_2 [ Expasy ]
Prosite	PS50039 FORK_HEAD_3 [ SRS ]    PS50039 FORK_HEAD_3 [ Expasy ]
Interpro	IPR013638 Fork-head_N [ SRS ]    IPR013638 Fork-head_N [ EBI ]
Interpro	IPR001766 TF_Fork_head [ SRS ]    IPR001766 TF_Fork_head [ EBI ]
Interpro	IPR011991 Wing_hlx_DNA_bd [ SRS ]    IPR011991 Wing_hlx_DNA_bd [ EBI ]
CluSTr	P55317
Pfam	PF00250 Fork_head [ SRS ]    PF00250 Fork_head [ Sanger ]    pfam00250 [ NCBI-CDD ]
Pfam	PF08430 Fork_head_N [ SRS ]    PF08430 Fork_head_N [ Sanger ]    pfam08430 [ NCBI-CDD ]
Smart	SM00339 FH [EMBL]
Prodom	PD000425 TF_Fork_head[INRA-Toulouse]
Prodom	P55317 FOXA1_HUMAN [ Domain structure ]   P55317 FOXA1_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	P55317
HPRD	03801
	Protein Interaction databases
DIP	P55317
IntAct	P55317
	Polymorphism : SNP, mutations, diseases
OMIM	602294    [ map ]
GENECLINICS	602294
SNP	FOXA1 [dbSNP-NCBI]
SNP	NM_004496 [SNP-NCI]
SNP	FOXA1 [GeneSNPs - Utah]  FOXA1] [HGBASE - SRS]
HAPMAP	FOXA1 [HAPMAP]
COSMIC	FOXA1 [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	FOXA1
	General knowledge
Family Browser	FOXA1 [UCSC Family Browser]
SOURCE	NM_004496
SMD	Hs.163484
SAGE	Hs.163484
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	transcription [Amigo]  transcription
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	lung development [Amigo]  lung development
GO	epithelial cell differentiation [Amigo]  epithelial cell differentiation
GO	hormone metabolic process [Amigo]  hormone metabolic process
GO	glucose homeostasis [Amigo]  glucose homeostasis
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
GO	positive regulation of transcription from RNA polymerase II promoter [Amigo]  positive regulation of transcription from RNA polymerase II promoter
GO	branching morphogenesis of a tube [Amigo]  branching morphogenesis of a tube
PubGene	FOXA1
TreeFam	FOXA1
CTD	3169 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	FOXA1 Related clones (RZPD - Berlin)
	PubMed
PubMed	28 Pubmed reference(s) in LocusLink

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Mon Aug 11 20:11:29 2008